NEET-PG 2013 - Biochemistry Practice Questions

Q: Apolipoprotein E is rich in

Arginine. ***Arginine*** - **Apolipoprotein E (apoE)** is notably rich in **basic amino acids**, with **arginine** being particularly abundant. - The high content of **positively charged arginine residues** is critical for apoE's ability to bind to negatively charged lipid surfaces and interact with receptors such as the **LDL receptor** and **LDL receptor-related protein (LRP)**. - This arginine-rich composition is a defining characteristic of apoE and is essential for its role in **lipid metabolism** and **receptor-mediated lipoprotein uptake**. *Lysine* - While apoE does contain **lysine** (another basic amino acid), it is **arginine** that is particularly abundant and functionally emphasized. - Both lysine and arginine contribute positive charges, but **arginine residues** are specifically highlighted in apoE's **receptor binding domains** and are more characteristic of this apolipoprotein. *Histidine* - **Histidine** is also a **basic amino acid**, but it is not present in the same high proportions as **arginine** in apoE. - Its pKa (~6.0) is closer to physiological pH, meaning its charge state can vary, making it less consistently positive than arginine or lysine in biological contexts. - Histidine is not a defining feature of apoE's amino acid composition. *Methionine* - **Methionine** is a **sulfur-containing, nonpolar amino acid**, not a basic amino acid. - It does not contribute to the positive charge characteristic of apoE. - Its role in proteins is typically structural or as the initiator of protein synthesis (as the first amino acid), but it is not relevant to apoE's receptor-binding properties.

Q: Primary hypercholesterolemia is:

Type IIa. ***Type Ha*** - **Primary hypercholesterolemia** specifically refers to **Familial Hypercholesterolemia**, which is classified as Type Ha due to a genetic defect affecting LDL receptor activity [1]. - It typically presents with **high cholesterol levels** and an increased risk of premature cardiovascular disease [1]. *Type I* - Type I hyperlipoproteinemia is associated with **chylomicronemia**, leading to elevated triglycerides rather than cholesterol. - Symptoms include **pancreatitis** and eruptive xanthomas, not primarily high cholesterol levels. *Type III* - Type III hyperlipoproteinemia is known as **Dysbetalipoproteinemia**, associated with **increased IDL** and can cause elevated cholesterol, but is not classified as primary hypercholesterolemia. - It typically presents with **tuberous xanthomas** and is linked to **apolipoprotein E deficiency**. *Type IIb* - Type IIb hyperlipoproteinemia involves **elevation of LDL and VLDL**, but it is not classified as primary hypercholesterolemia; it is a mixed dyslipidemia. - This type usually features **increased cholesterol** and **triglycerides**, distinguishing it from the familial form classified as Type Ha.

Q: Which type of bond is primarily responsible for the primary structure of a protein?

Peptide bond. ***Peptide bond*** - The **primary structure** of a protein is defined by the unique linear sequence of **amino acids** linked together by **peptide bonds**. - These are **amide bonds** formed between the carboxyl group of one amino acid and the amino group of another, with the elimination of water. *Hydrogen bond* - **Hydrogen bonds** are crucial for the **secondary structure** (e.g., alpha-helices and beta-sheets) and **tertiary/quaternary structures** of proteins, stabilizing their 3D folds. - They involve interactions between polar atoms, not the direct linkage of amino acids in the primary sequence. *Disulfide bond* - **Disulfide bonds** are **covalent bonds** formed between the sulfur atoms of two **cysteine residues**, contributing to the **tertiary** and sometimes **quaternary structure** stability. - They are not involved in forming the linear sequence of amino acids, which is the primary structure. *Electrostatic bond* - **Electrostatic bonds**, or **ionic bonds**, occur between oppositely charged amino acid side chains and are important for **tertiary** and **quaternary structure** stability. - They do not form the backbone of the protein's primary sequence.

Q: Which amino acid has two chiral centers?

Threonine. ***Threonine*** - Threonine is unique among the standard 20 amino acids because it possesses **two chiral centers**: one at the **alpha-carbon** and another at the **beta-carbon**. - The presence of two chiral centers means that threonine can exist as **four stereoisomers** (2^n, where n is the number of chiral centers). *Tryptophan* - Tryptophan has only **one chiral center**, which is the **alpha-carbon** bonded to the amino group, carboxyl group, hydrogen atom, and the side chain. - Its side chain, an **indole ring**, does not contain an additional chiral center. *Tyrosine* - Tyrosine, like most amino acids, possesses only **one chiral center** at its **alpha-carbon**. - The aromatic ring system (phenol group) in its side chain does not introduce another chiral center. *Phenylalanine* - Phenylalanine also has only **one chiral center** located at its **alpha-carbon**. - Its benzyl side chain, consisting of a methylene group and a benzene ring, is not chiral.

Q: Which of the following is a neutral amino acid?

Glycine. ***Glycine*** - **Glycine** has a hydrogen atom as its side chain, making it the **simplest amino acid** and electrically neutral at physiological pH. - Its **nonpolar side chain** contributes to its neutral charge and allows it to fit into various protein structures. *Aspartate* - **Aspartate** is an **acidic amino acid** with a carboxyl group in its side chain. - This **carboxyl group** can lose a proton, giving aspartate a net negative charge at physiological pH. *Arginine* - **Arginine** is a **basic amino acid** characterized by a guanidinium group in its side chain. - The **guanidinium group** contains multiple nitrogen atoms that can accept protons, making arginine positively charged at physiological pH. *Histidine* - **Histidine** is classified as a **basic amino acid** due to the imidazole ring in its side chain. - The **imidazole ring** has a pKa close to physiological pH, allowing it to be protonated and positively charged, but it is not neutral.

Q: Amino acid with aliphatic side chain is?

Leucine. ***Leucine*** - Leucine has an **isobutyl group** (-CH2CH(CH3)2) as its side chain, making it a **nonpolar aliphatic amino acid**. - **Aliphatic amino acids** (glycine, alanine, valine, leucine, isoleucine, proline) have side chains consisting of only carbon and hydrogen atoms in straight or branched chains, with **no polar functional groups**. - These amino acids are **hydrophobic** and typically found in the interior of proteins. *Serine* - Serine has a **hydroxyl group** (-OH) in its side chain (-CH2OH), classifying it as a **polar uncharged amino acid**, not an aliphatic amino acid. - The hydroxyl group makes the side chain **hydrophilic** and capable of hydrogen bonding. - The presence of the polar functional group distinguishes it from aliphatic amino acids. *Threonine* - Threonine also contains a **hydroxyl group** (-OH) in its side chain (-CH(OH)CH3), making it a **polar uncharged amino acid**, not an aliphatic amino acid. - Like serine, the hydroxyl group provides **polarity and hydrogen bonding capacity**. - This functional group places it in a different classification from aliphatic amino acids. *Aspartate* - Aspartate has a **carboxyl group** (-COOH) in its side chain (-CH2COOH), making it an **acidic (negatively charged) amino acid**. - At physiological pH, this group is deprotonated (COO⁻), making aspartate **negatively charged**. - This clearly distinguishes it from nonpolar aliphatic amino acids.

Q: Serotonin is derived from -

Tryptophan. ***Tryptophan*** - **Serotonin**, also known as 5-hydroxytryptamine (5-HT), is synthesized from the essential amino acid **tryptophan** through a two-step enzymatic pathway. - Tryptophan is first hydroxylated by tryptophan hydroxylase to 5-hydroxytryptophan (5-HTP), which is then decarboxylated by L-amino acid decarboxylase to form serotonin. *Tyrosine* - **Tyrosine** is a precursor for the synthesis of **catecholamines** (dopamine, norepinephrine, and epinephrine) and thyroid hormones. - It is not involved in the synthesis pathway for serotonin. *Phenylalanine* - **Phenylalanine** is an essential amino acid that is hydroxylated to form **tyrosine**. - Therefore, it is indirectly involved in catecholamine synthesis but not in serotonin synthesis. *Methionine* - **Methionine** is an essential amino acid primarily known for its role in protein synthesis and as a precursor for **S-adenosylmethionine (SAM)**, a methyl group donor in many biological reactions. - It does not serve as a direct precursor for serotonin.

Q: Catecholamines are synthesized from?

Tyrosine. ***Tyrosine*** - **Tyrosine** is the direct precursor amino acid for the synthesis of all **catecholamines**, including **dopamine**, **norepinephrine**, and **epinephrine**. - The synthesis pathway begins with the conversion of tyrosine to **L-DOPA** by tyrosine hydroxylase, followed by subsequent enzymatic steps. *Methionine* - **Methionine** is an essential amino acid primarily involved in **protein synthesis** and as a precursor for S-adenosylmethionine (SAM), a key methyl donor in various metabolic reactions. - It is not a direct precursor for the synthesis of **catecholamines**. *Histidine* - **Histidine** is the precursor for the synthesis of **histamine**, a neurotransmitter and inflammatory mediator. - It is not involved in the biosynthesis pathway of **catecholamines**. *Tryptophan* - **Tryptophan** is the precursor for the synthesis of **serotonin** and **melatonin**, important neurotransmitters and hormones. - It does not play a role in the synthesis of **catecholamines**.

Q: Which of the following amino acids is not involved in the production of creatine?

Alanine. ***Alanine*** - **Alanine** is not directly involved as a precursor for **creatine synthesis**. It can be converted to pyruvate and enter the gluconeogenic pathway. - The primary amino acids involved in **creatine synthesis** are arginine, glycine, and methionine. *Glycine* - **Glycine** is a direct precursor for creatine, reacting with arginine in the first step of its synthesis to form **guanidinoacetate**. - This reaction is catalyzed by **arginine:glycine amidinotransferase (AGAT)**. *Methionine* - **Methionine**, in the form of **S-adenosylmethionine (SAM)**, acts as the methyl donor in the second step of creatine synthesis. - It methylates guanidinoacetate to form **creatine**, a reaction catalyzed by **guanidinoacetate methyltransferase (GAMT)**. *Arginine* - **Arginine** donates its guanidino group to glycine, forming **guanidinoacetate**, the initial intermediate in creatine synthesis. - This is the first committed step in the **creatine biosynthesis pathway**.

Q: Ninhydrin test is used for?

Amino acids. ***Amino acids*** - The **ninhydrin test** is a chemical test used to detect the presence of **amino acids** and primary and secondary amines. - It produces a **purple-blue color** when it reacts with most amino acids, due to the formation of a colored complex called Ruhemann's purple. *Bile salts* - The detection of **bile salts** typically involves tests like Hay's test or Pettenkofer's test, which are distinct from the ninhydrin reaction. - These tests rely on the physical or chemical properties of bile salts, such as changes in surface tension or specific color reactions with sulfuric acid. *Nucleic acid* - **Nucleic acids** (DNA and RNA) are detected using specific tests like the **diphenylamine test** (for DNA) or orcinol test (for RNA). - These tests target the deoxyribose or ribose sugars present in their structures and result in different color changes compared to ninhydrin. *Lipids* - **Lipids** are typically identified using tests that exploit their nonpolar nature, such as the **emulsion test** or solubility tests in organic solvents. - Their detection does not involve ninhydrin, as they lack the primary or secondary amine groups that react with this reagent.

Question 1

Apolipoprotein E is rich in

Accepted Answer

Arginine

Answer

Methionine

Answer

Lysine

Answer

Histidine

Question 2

Primary hypercholesterolemia is:

Accepted Answer

Type IIa

Answer

Type I

Answer

Type IIb

Answer

Type III

Question 3

Which type of bond is primarily responsible for the primary structure of a protein?

Accepted Answer

Peptide bond

Answer

Hydrogen bond

Answer

Disulfide bond

Answer

Electrostatic bond

Question 4

Which amino acid has two chiral centers?

Accepted Answer

Threonine

Answer

Tyrosine

Answer

Tryptophan

Answer

Phenylalanine

Question 5

Which of the following is a neutral amino acid?

Accepted Answer

Glycine

Answer

Aspartate

Answer

Arginine

Answer

Histidine

Question 6

Amino acid with aliphatic side chain is?

Accepted Answer

Leucine

Answer

Serine

Answer

Threonine

Answer

Aspartate

Question 7

Serotonin is derived from -

Accepted Answer

Tryptophan

Answer

Tyrosine

Answer

Phenylalanine

Answer

Methionine

Question 8

Catecholamines are synthesized from?

Accepted Answer

Tyrosine

Answer

Histidine

Answer

Methionine

Answer

Tryptophan

Question 9

Which of the following amino acids is not involved in the production of creatine?

Accepted Answer

Alanine

Answer

Glycine

Answer

Methionine

Answer

Arginine

Question 10

Ninhydrin test is used for?

Accepted Answer

Amino acids

Answer

Bile salts

Answer

Nucleic acid

Answer

Lipids

NEET-PG 2013 — Biochemistry