NEET-PG 2012 - Biochemistry Practice Questions

Q: At which positions does pancreatic lipase hydrolyze the ester linkages of triacylglycerides?

1 and 3. **Correct: 1 and 3** - Pancreatic lipase specifically targets the **ester bonds at the sn-1 and sn-3 positions** (primary alcohol positions) on the glycerol backbone of triacylglycerides. - This positional specificity results in the formation of **2-monoacylglycerol (2-MAG)** and **two free fatty acids**. - This is the characteristic action of pancreatic triacylglycerol lipase during fat digestion in the intestinal lumen. *Incorrect: 1 and 2* - Hydrolysis at positions 1 and 2 would produce a 3-monoacylglycerol and free fatty acids, which is not the physiological product of pancreatic lipase. - The enzyme's positional specificity favors the outer sn-1 and sn-3 positions, not the middle sn-2 position. *Incorrect: 2 and 3* - Hydrolysis at positions 2 and 3 would yield a 1-monoacylglycerol and free fatty acids, which does not reflect pancreatic lipase activity. - The enzyme specifically spares the sn-2 position due to its structural specificity. *Incorrect: Only 3* - If only position 3 were hydrolyzed, the product would be a 1,2-diacylglycerol and one free fatty acid. - This represents incomplete hydrolysis; pancreatic lipase typically hydrolyzes **both outer positions (sn-1 and sn-3)** due to its regiospecificity.

Q: Where does oxidative deamination primarily occur in the human body?

Mitochondria of liver cells. ***Mitochondria of liver cells*** - **Oxidative deamination**, particularly of glutamate, is a central process in **amino acid catabolism** and occurs predominantly in the **mitochondria of liver cells**. - This process is crucial for removing the **amino group (NH3)** from amino acids, forming ammonia, which is then detoxified into urea. *Cytoplasm of all cells* - While cells have cytoplasmic metabolic pathways, the primary enzyme for oxidative deamination, **glutamate dehydrogenase**, is located in the mitochondria. - The cytoplasm primarily handles glycolysis and various synthetic pathways, but not the bulk of oxidative deamination. *Mitochondria of all cells* - Although mitochondria are the site of oxidative metabolism in most cells, the **liver** is the main organ responsible for processing exogenous amino acids and their subsequent comprehensive deamination. - Other cells perform some amino acid metabolism, but not the large-scale oxidative deamination seen in the liver. *Cytoplasm of liver cells* - The cytoplasm of liver cells is involved in various metabolic processes, including gluconeogenesis and fatty acid synthesis. - However, the key enzymes for oxidative deamination are specifically compartmentalized within the **mitochondria** of these cells, not the cytoplasm.

Q: The cofactor vitamin B12 is required for the following conversion:

Methyl malonyl CoA to succinyl CoA. ***Methyl malonyl CoA to succinyl CoA*** - **Vitamin B12**, in its active form **adenosylcobalamin**, is a crucial cofactor for the enzyme **methylmalonyl-CoA mutase**, which catalyzes the isomerization of **methylmalonyl-CoA to succinyl-CoA**. - This conversion is vital for the metabolism of **odd-chain fatty acids** and certain **amino acids**, allowing their entry into the **Krebs cycle**. *Dopamine to Norepinephrine* - This conversion is catalyzed by **dopamine beta-hydroxylase**, which requires **vitamin C** (ascorbate) and **copper** as cofactors, not vitamin B12. - It is a key step in the synthesis of **catecholamines** within the nervous system. *Propionyl CoA to methyl malonyl CoA* - This conversion is catalyzed by **propionyl-CoA carboxylase** and requires **biotin** as a cofactor, not vitamin B12. - This reaction is the first step in the metabolic pathway that leads to succinyl-CoA from odd-chain fatty acids. *Homocysteine to cysteine* - This conversion occurs via the **transsulfuration pathway** and requires **vitamin B6** (pyridoxal phosphate) as a cofactor, not vitamin B12. - The enzymes involved are **cystathionine β-synthase** and **cystathionine γ-lyase**, both B6-dependent. - Vitamin B12 is involved in the **remethylation** of homocysteine to methionine (not in transsulfuration to cysteine).

Q: Which enzyme in the TCA cycle catalyzes the step where substrate-level phosphorylation occurs?

Succinate thiokinase. ***Succinate thiokinase*** - This enzyme (also known as **succinyl-CoA synthetase**) catalyzes the conversion of **succinyl-CoA** to **succinate**. - During this reaction, the energy released from breaking the **thioester bond** in succinyl-CoA is directly used to synthesize **GTP** (or ATP in some organisms) from GDP (or ADP) and inorganic phosphate, which is a classic example of **substrate-level phosphorylation**. *Isocitrate dehydrogenase* - This enzyme catalyzes the **oxidative decarboxylation** of isocitrate to $\alpha$-ketoglutarate. - This step produces **NADH** and **CO2** but does not involve substrate-level phosphorylation. *Malate dehydrogenase* - This enzyme catalyzes the oxidation of **L-malate** to **oxaloacetate** in the final step of the TCA cycle. - It produces **NADH** but does not involve the direct synthesis of ATP or GTP. *Aconitase* - This enzyme catalyzes the **isomerization** of **citrate** to **isocitrate** via an aconitate intermediate. - No energy is generated or consumed in the form of ATP/GTP during this rearrangement.

Q: Which of the following does not play a role in protein synthesis?

Intron. ***Intron*** - Introns are **non-coding regions** within a gene that are transcribed into RNA but are subsequently **spliced out** before translation. - They do not carry genetic information for protein synthesis; their removal ensures the correct sequence of amino acids is produced. *Exon* - Exons are the **coding regions** of a gene that contain the genetic information for protein synthesis. - After introns are removed, exons are ligated together to form the **mature mRNA** that is translated into protein. *m-RNA* - **Messenger RNA (mRNA)** carries the genetic code from DNA in the nucleus to the ribosomes in the cytoplasm. - It serves as the **template** for protein synthesis through the process of translation. *ATP* - **Adenosine triphosphate (ATP)** provides the **energy** required for various steps in protein synthesis, including mRNA transcription, amino acid activation, and ribosome movement. - It is a crucial energy currency that fuels the process of forming peptide bonds and assembling the polypeptide chain.

Q: Which of the following metabolites is involved in glycogenolysis, glycolysis and gluconeogenesis ?

Glucose-6-phosphate. ***Glucose-6-phosphate*** - In **glycogenolysis**, **glycogen phosphorylase** breaks down glycogen into **glucose-1-phosphate**, which is then converted into **glucose-6-phosphate** by **phosphoglucomutase**. - In **glycolysis**, **glucose-6-phosphate** is isomerized to **fructose-6-phosphate** by **phosphoglucose isomerase**, committing it to the glycolytic pathway. - In **gluconeogenesis**, **glucose-6-phosphate** is the final product formed from other precursors; it can then be dephosphorylated to free glucose by **glucose-6-phosphatase**. *Galactose-1-phosphate* - This is an intermediate specifically in **galactose metabolism**, not directly involved in the central common pathways of glycogenolysis, glycolysis, or gluconeogenesis. - It is converted to **glucose-1-phosphate** via the **Leloir pathway** (involving **galactose-1-phosphate uridylyltransferase**), which can then enter glycogen metabolism. *Uridine diphosphoglucose* - **UDP-glucose** is crucial for **glycogen synthesis** (**glycogenesis**), serving as the activated glucose donor. - It is not directly a metabolite in the catabolic process of glycogenolysis, nor is it a direct intermediate in glycolysis or gluconeogenesis. *Fructose-6-phosphate* - **Fructose-6-phosphate** is a key intermediate in **glycolysis** and **gluconeogenesis**, specifically downstream from **glucose-6-phosphate**. - However, it is not directly produced from glycogenolysis; **glucose-6-phosphate** is the direct link between glycogenolysis and glycolysis.

Q: Which molecule serves as the ultimate source of acetyl groups for fatty acid synthesis?

Acetyl CoA. ***Acetyl CoA*** - **Acetyl CoA** is the ultimate source of all acetyl groups used in fatty acid synthesis - It serves as the substrate for **acetyl CoA carboxylase**, which converts it to **malonyl CoA** - After transport from mitochondria via **citrate**, acetyl CoA is the precursor for all two-carbon units incorporated into fatty acids - One molecule of acetyl CoA also serves as the primer for fatty acid synthesis *Malonyl CoA* - **Malonyl CoA** is the direct two-carbon donor to the growing fatty acid chain - However, it is derived from **acetyl CoA** through carboxylation by **acetyl CoA carboxylase** - It is an intermediate, not the ultimate source of acetyl groups *Palmitate* - **Palmitate** is a 16-carbon saturated fatty acid that is the end product of de novo fatty acid synthesis - It is the product of fatty acid synthesis, not a donor of acetyl groups *Citrate* - **Citrate** transports acetyl groups from the **mitochondria** to the **cytosol** where fatty acid synthesis occurs - In the cytosol, **ATP citrate lyase** cleaves citrate back into **acetyl CoA** and oxaloacetate - Citrate is a transport vehicle, not the ultimate source of acetyl groups

Q: The Central Dogma of molecular biology includes all except?

Reverse transcription. ***Reverse transcription*** - The **original Central Dogma** as proposed by Francis Crick described the unidirectional flow of genetic information: **DNA → RNA → Protein**. - **Reverse transcription** (RNA → DNA) was **not part of the original Central Dogma** and was only discovered later with the identification of **reverse transcriptase enzyme** in retroviruses by Baltimore and Temin (1970). - While reverse transcription is now recognized as an important biological process, it represents an **exception to the classical Central Dogma** rather than a core component. *Transcription* - **Transcription** (DNA → RNA) is a **fundamental process** within the Central Dogma. - It involves synthesis of RNA from a DNA template and is the first step in gene expression in all living organisms. *Translation* - **Translation** (RNA → Protein) is the **second major step** of the Central Dogma. - This process occurs on ribosomes where mRNA is decoded into a specific sequence of amino acids to form proteins. *RNA replication* - **RNA replication** (RNA → RNA), while primarily seen in RNA viruses, is considered part of the **expanded Central Dogma**. - It represents one of the possible flows of genetic information in biological systems, though not universal to all organisms.

Q: Carnitine is synthesised from -

Lysine. ***Lysine*** - **Carnitine** is synthesized in the liver and kidneys from the amino acids **lysine** and methionine. - **Lysine provides the essential carbon backbone** for carnitine synthesis (trimethyllysine is the actual precursor formed from protein-bound lysine residues). - Methionine contributes methyl groups via S-adenosylmethionine (SAM), but lysine is the primary structural precursor. *Arginine* - **Arginine** is a precursor for **nitric oxide**, urea, and creatine, but not a direct precursor for carnitine synthesis. - While arginine is an amino acid, its metabolic pathways are distinct from those involved in carnitine formation. *Histidine* - **Histidine** is a precursor for **histamine** and contributes to protein synthesis, but is not involved in carnitine biosynthesis. - Its metabolic fate differs significantly from the pathway leading to carnitine. *Choline* - **Choline** is a precursor for **acetylcholine** and phospholipids, but not directly for carnitine. - Although both choline and carnitine contain methyl groups, they have different biosynthetic origins.

Q: NADH via glycerophosphate shunt makes how many ATP?

2. ***2*** - The **glycerol phosphate shuttle** transfers electrons from **cytosolic NADH** to **FAD** in the mitochondrial electron transport chain. - Each **FADH2** molecule produced then enters the electron transport chain at **Complex II**, ultimately leading to the generation of approximately **2 ATP** molecules. *1* - This option would be correct if the electrons were transferred to a molecule that yields only **one ATP** equivalent, which is not the case for **FADH2**. - No direct mechanism in a shunt generates exactly one ATP per NADH equivalent. *3* - This value represents the ATP yield from **NADH** when it directly enters the electron transport chain via the **malate-aspartate shuttle**, not the **glycerophosphate shuttle**. - The **glycerophosphate shuttle** is less efficient than the **malate-aspartate shuttle**. *4* - This number is not a standard ATP yield for either **NADH** or **FADH2** in the electron transport chain. - The maximum yield for NADH is typically considered to be 2.5 or 3 ATP, and for FADH2 is 1.5 or 2 ATP, depending on the shuttle and precise calculations.

Question 1

At which positions does pancreatic lipase hydrolyze the ester linkages of triacylglycerides?

Accepted Answer

1 and 3

Answer

1 and 2

Answer

2 and 3

Answer

Only 3

Question 2

Where does oxidative deamination primarily occur in the human body?

Accepted Answer

Mitochondria of liver cells

Answer

Cytoplasm of all cells

Answer

Mitochondria of all cells

Answer

Cytoplasm of liver cells

Question 3

The cofactor vitamin B12 is required for the following conversion:

Accepted Answer

Methyl malonyl CoA to succinyl CoA

Answer

Dopamine to Norepinephrine

Answer

Propionyl CoA to methyl malonyl CoA

Answer

Homocysteine to cysteine

Question 4

Which enzyme in the TCA cycle catalyzes the step where substrate-level phosphorylation occurs?

Accepted Answer

Succinate thiokinase

Answer

Isocitrate dehydrogenase

Answer

Malate dehydrogenase

Answer

Aconitase

Question 5

Which of the following does not play a role in protein synthesis?

Accepted Answer

Intron

Answer

m-RNA

Answer

ATP

Answer

Exon

Question 6

Which of the following metabolites is involved in glycogenolysis, glycolysis and gluconeogenesis ?

Accepted Answer

Glucose-6-phosphate

Answer

Uridine diphosphoglucose

Answer

Fructose-6-phosphate

Answer

Galactose-1-phosphate

Question 7

Which molecule serves as the ultimate source of acetyl groups for fatty acid synthesis?

Accepted Answer

Acetyl CoA

Answer

Malonyl CoA

Answer

Palmitate

Answer

Citrate

Question 8

The Central Dogma of molecular biology includes all except?

Accepted Answer

Reverse transcription

Answer

Transcription

Answer

RNA replication

Answer

Translation

Question 9

Carnitine is synthesised from -

Accepted Answer

Lysine

Answer

Histidine

Answer

Choline

Answer

Arginine

Question 10

NADH via glycerophosphate shunt makes how many ATP?

Accepted Answer

2

Answer

1

Answer

4

Answer

3

NEET-PG 2012 — Biochemistry