INI-CET 2025 — Microbiology

Q: Two different specimens from two patients are received. Which of the following techniques can confirm they are from different individuals (in the context of Mycobacterium tuberculosis)?

RFLP. ***Correct: RFLP*** - **RFLP** (Restriction Fragment Length Polymorphism), particularly using the **IS6110 insertion sequence**, is the traditional gold standard tool for **epidemiological strain typing** of *M. tuberculosis*. - Confirmation that two specimens are from different individuals relies on visualizing two distinct banding patterns, indicating different arrangements of the **IS6110** elements in their respective genomes. - RFLP has **high discriminatory power** for differentiating between strains and establishing epidemiological links. *Incorrect: Mutation analysis* - This technique primarily focuses on detecting **point mutations** in specific genes (e.g., *rpoB*, *katG*) to determine drug susceptibility or resistance patterns. - While differences in resistance profiles suggest different strains, it lacks the **high discriminatory power** of RFLP or VNTR for broad epidemiological linkage assessment. *Incorrect: Pyrosequencing* - Pyrosequencing is a rapid method of DNA sequencing often used to detect **single nucleotide polymorphisms (SNPs)** or specific mutations, such as those related to drug resistance. - It is utilized for sequencing short regions and is not the primary technique for comparing the **large-scale genomic structures** necessary for definitive strain fingerprinting. *Incorrect: RAPD* - **RAPD** (Random Amplification of Polymorphic DNA) is an older PCR-based method that uses arbitrary primers to generate a pattern of amplified DNA fragments. - While used for strain comparison in some bacteria, RAPD is generally considered **less reproducible** and has **lower discriminatory power** than RFLP or VNTR for *M. tuberculosis* typing.

11 Questions — Page 2 of 2

Q11

Two different specimens from two patients are received. Which of the following techniques can confirm they are from different individuals (in the context of Mycobacterium tuberculosis)?