Pharmacogenetics and Personalized Medicine

Pharmacogenetics and Personalized Medicine

Pharmacogenetics and Personalized Medicine

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Pharmacogenetics Basics - Gene-Drug Dance Intro

  • Pharmacogenetics (PGt): How single genes affect drug response; specific gene-drug interactions.
  • Pharmacogenomics (PGx): Broader; how genome (all genes) affects drug response.
  • Goal: Tailor drug choice & dose to individual genetic makeup.
    • Maximise efficacy.
    • Minimise adverse drug reactions (ADRs).
  • Foundation of Personalized Medicine: Right drug, right dose, right patient.
  • Genetic variations (e.g., SNPs) alter drug ADME & drug targets. Factors influencing individual drug response

⭐ PGt/PGx aims to predict if a drug will be effective or cause side effects before it's prescribed.

Genetic Variations - DNA's Drug Twists

  • Principle: Inherited DNA sequence changes cause inter-individual differences in drug response.
  • Major Types of Variations:
    • SNPs (Single Nucleotide Polymorphisms): Most frequent; single base-pair substitutions (e.g., C→T).
    • Indels: Small insertions or deletions of DNA bases.
    • CNVs (Copy Number Variations): Duplication or deletion of larger DNA segments, affecting gene dosage.
  • Consequences:
    • Altered drug metabolism (e.g., CYP enzymes).
    • Modified drug transporter function.
    • Changes in drug target sensitivity. Types of genetic variations in pharmacogenetics

TPMT gene variations: Predict thiopurine (e.g., azathioprine, 6-mercaptopurine) toxicity. Low TPMT activity leads to ↑ risk of myelosuppression.

Key Pathways & Players - Metabolism's Genetic Code

  • Cytochrome P450 (CYPs): Key drug metabolizers.
    • CYP2D6: Codeine (↓ analgesia), tamoxifen (↓ efficacy).
    • CYP2C9: Warfarin (↑ bleeding risk with *2, *3 variants).
    • CYP2C19: Clopidogrel (↓ effect with *2, *3; "resistance").
  • Other Enzymes:
    • TPMT (Thiopurine S-Methyltransferase): Azathioprine, 6-MP (↑ myelosuppression with low activity).
    • UGT1A1: Irinotecan (↑ toxicity with *28 allele), bilirubin.
  • Transporters:
    • SLCO1B1 (OATP1B1): Statins (simvastatin, ↑ myopathy with 521T>C).
    • ABCB1 (MDR1/P-glycoprotein): Digoxin (altered levels).

⭐ TPMT testing is crucial before initiating thiopurines (azathioprine, 6-MP) to prevent severe myelosuppression in deficient individuals.

Clinical Applications - Genes Guiding Doses

  • Warfarin: CYP2C9 (metabolism) & VKORC1 (sensitivity) variants guide dose.
    • ↓ function alleles require ↓ dose to reduce bleeding risk.
  • Clopidogrel: CYP2C19 activates prodrug.
    • Poor metabolizers (PMs): ↓ efficacy, ↑ MACE. Alt: prasugrel, ticagrelor.
  • Abacavir: HLA-B*5701 testing mandatory.
    • Positive: high HSR risk; contraindicated.

⭐ HLA-B*1502 screening in Asians for Carbamazepine is crucial to prevent SJS/TEN.

  • Azathioprine/6-MP: TPMT/NUDT15 variants affect metabolism.
    • ↓ enzyme activity: ↑ myelosuppression risk. Dose reduction vital.
  • Codeine: CYP2D6 metabolizes to morphine.
    • Ultra-rapid metabolizers (UMs): ↑ toxicity risk. Poor metabolizers (PMs): ↓ analgesia.

Future & Hurdles - Tailored Meds Ahead

  • Future Scope:
    • AI/ML for drug development & patient selection
    • Polygenic Risk Scores (PRS) for disease prediction
    • Advanced gene editing (e.g., CRISPR)
    • Seamless PGx data integration in EHRs
  • Key Hurdles:
    • Ethical, Legal, Social Implications (ELSI)
    • High costs & reimbursement issues
    • Clinical implementation & workforce training
    • Data security & privacy concerns
    • Managing complex gene-environment interactions

⭐ Pre-treatment screening for HLA-B*5701 is crucial to prevent abacavir hypersensitivity.

High‑Yield Points - ⚡ Biggest Takeaways

  • Genetic variations (e.g., SNPs, CYP2D6, TPMT) significantly alter drug efficacy and toxicity.
  • CYP2D6 polymorphisms impact metabolism of codeine, tamoxifen, and many beta-blockers.
  • TPMT deficiencymercaptopurine toxicity (e.g., myelosuppression); genotyping crucial.
  • Warfarin dosing is guided by CYP2C9 & VKORC1 variants for optimal anticoagulation.
  • HLA-B*5701 screening is vital before abacavir to prevent severe hypersensitivity.
  • Clopidogrel efficacy ↓ in CYP2C19 poor metabolizers.
  • Personalized medicine optimizes drug therapy using an individual's genetic profile.

Practice Questions: Pharmacogenetics and Personalized Medicine

Test your understanding with these related questions

HLA-B*5701 is an allele associated with hypersensitivity to abacavir. Which of the following is the parent allele of HLA-B*5701?

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Flashcards: Pharmacogenetics and Personalized Medicine

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Schedule _____ drugs are marketed under generic name only

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Schedule _____ drugs are marketed under generic name only

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