Specimen Collection and Transport

Specimen Collection and Transport

Specimen Collection and Transport

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General Principles - Collection Commandments

  • Collect Before Antimicrobials: Maximizes pathogen yield.
  • Aseptic Technique: Prevents contamination from normal flora.
  • Appropriate Site & Quantity: Target infected area; collect sufficient material.
  • Correct Container & Label: Use sterile, appropriate containers; label accurately (patient details, site, date, time).
  • Prompt Transport: Ideally <2 hours to lab; use transport media if delay is unavoidable.
  • Relevant Clinical Info: Provide history, suspected diagnosis to guide lab processing. 📌 6 Rights: Right Patient, Right Specimen, Right Time, Right Container, Right Transport, Right Label.

⭐ For blood cultures, collect 2-3 sets (20-30 mL per set for adults) from different venipuncture sites, ideally before fever spike or during chills.

Common Specimen Types - Sample Site Smarts

  • Blood:
    • Site: Peripheral venipuncture.
    • Vol: Adults 10-20 mL/set; Paeds 1-5 mL.
    • Sets: 2-3, different sites, for sepsis.
    • Timing: Pre-antibiotics, febrile episodes.
  • Urine:
    • Type: Mid-stream clean catch (MSU).
    • Preservative: Boric acid (>2h delay).
    • Vol: 10-20 mL.
  • CSF:
    • Site: Lumbar puncture (L3-L4/L5).
    • Tubes (seq.): 1-Chem, 2-Micro, 3-Cells. 📌 Mnemonic: Chem Lab Cells.
    • Transport: STAT, room temp.

    ⭐ Never refrigerate CSF if N. meningitidis or H. influenzae suspected (cold-sensitive).

  • Sputum:
    • Type: Deep cough.
    • Quality: >25 PMNs, <10 squamous/LPF.
  • Stool:
    • Portion: Mucoid/bloody.
    • Preservative: Cary-Blair (bacteria), Formalin (O&P).
  • Swabs (Throat, Wound, Genital):
    • Wound: Aspirates > swabs for pus. Advancing edge.
    • Transport: Amies/Stuart's (bacteria), VTM (viruses).

Biofluid Collection Sites

Transport Media & Conditions - Carry On, Microbes!

Maintain viability, prevent drying & overgrowth, no multiplication.

  • Key Media:
    • Stuart's/Amies: General, fastidious (GC, H. influenzae). Charcoal neutralizes.
    • Cary-Blair: Faeces (Salmonella, Shigella, Vibrio, Campylobacter). pH 8.4.
    • VR Medium (Venkatraman-Ramakrishnan): Vibrio cholerae.
    • Pike's Medium: Streptococcus pyogenes (throat swabs).
    • VTM (Viral Transport Medium): Viruses. Contains protein, antibiotics. Store 4°C (short-term), -70°C (long-term).
  • Temperature Conditions:
    • Most specimens: Room temperature or 2-8°C (refrigeration).
    • CSF (bacterial meningitis): Room temp. ⚠️ Avoid refrigeration for suspected N. meningitidis, H. influenzae (cold sensitive).
    • Urine for culture: Refrigerate at 4°C if delay >2 hours.
    • Blood culture bottles: Incubate at 37°C or room temp as per bottle type.
    • Anaerobic specimens: Room temperature.
  • Anticoagulant (Blood Culture):
    • SPS (Sodium Polyanethol Sulfonate): Anticoagulant, antiphagocytic, neutralizes complement & some antibiotics.

📌 Cary Blair for Campylobacter & Cholera.

⭐ > For suspected Neisseria gonorrhoeae, swabs should ideally be plated directly onto selective media or transported in Amies medium with charcoal, reaching the lab within 6 hours.

FecalSwab collection and transport system

Specimen Rejection - Gatekeeper's Guide

Crucial for reliable results. Common reasons for rejection:

  • Identification: Mislabeled, unlabeled, or mismatched specimen/requisition form.
  • Container & Transport: Incorrect, non-sterile, or leaking container. Wrong/no preservative. Improper temperature or prolonged transit (>2 hrs general rule; CSF <1 hr).
  • Specimen Quality: Insufficient quantity (QNS). Obvious contamination (e.g., saliva in sputum: >25 Squamous Epithelial Cells/LPF). Dry swab. Specimen in fixative (for culture).

Specimen Rejection Criteria

⭐ A 24-hour urine specimen for culture is generally unacceptable due to uncontrolled bacterial proliferation; timed collections are for chemistry.

High‑Yield Points - ⚡ Biggest Takeaways

  • Blood cultures: Collect before antibiotics; 2-3 sets from different venipuncture sites.
  • CSF: Transport immediately at room temperature; never refrigerate.
  • Urine: Mid-stream clean catch; refrigerate if delayed >2 hours or use boric acid.
  • Sputum for AFB: 3 early morning samples on consecutive days.
  • Swabs: Use transport media (Stuart's/Amies) to prevent drying and maintain viability.
  • Anaerobic samples: Collect from sterile sites; use anaerobic transport media.
  • Accurate labeling is critical: patient ID, site, date/time_of_collection_
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Practice Questions: Specimen Collection and Transport

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Stuart's medium is a transport medium for

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_____ medium is the transport media used for Neisseria.

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_____ medium is the transport media used for Neisseria.

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