Histology: Tissue Prep - Slice of Life
- Fixation: Preserves tissue structure, typically with formalin.
- Dehydration: An ascending series of alcohol removes water.
- Clearing: Xylene makes the tissue transparent by removing alcohol.
- Infiltration: The tissue is permeated with molten paraffin wax.
- Embedding: The sample is placed in a wax block for support.
- Sectioning: A microtome cuts the block into 4-5 µm thick sections.

⭐ Formalin creates covalent cross-links between proteins (lysine residues), which preserves tissue structure but can also mask antigenic sites, requiring antigen retrieval for IHC.
Basic Staining - The Color Purple
- Hematoxylin (H): A basic dye that stains acidic, basophilic structures blue.
- Stains: Nucleus (DNA/RNA), rough endoplasmic reticulum (rER), ribosomes.
- Eosin (E): An acidic dye that stains basic, eosinophilic (acidophilic) structures pink/red.
- Stains: Cytoplasm, mitochondria, collagen, muscle.
📌 Basophilic = Blue (attracts basic dyes). Acidophilic = Pink/Red (attracts acidic dyes like eosin).
⭐ Nissl bodies (rER in neurons) are basophilic, staining dark blue with H&E.
IHC Principles - Tag, You're It!
- Goal: To visualize a specific protein (antigen) within a tissue slice using an antibody-based system.
- Core Components:
- Antigen (Ag): The target protein.
- Primary Antibody (1° Ab): Binds to the antigen.
- Secondary Antibody (2° Ab): Binds the 1° Ab, carrying an enzyme.
- Enzyme: Horseradish Peroxidase (HRP) is the workhorse.
- Chromogen: Diaminobenzidine (DAB) is catalyzed by HRP to produce a stable, visible brown precipitate.

⭐ The indirect IHC method is more sensitive than the direct method because multiple secondary antibodies can bind to a single primary antibody, amplifying the signal.
Clinical IHC Markers - Cancer's Calling Card
Immunohistochemistry (IHC) uses antibodies to detect specific antigens (proteins) in tissue samples, acting as a "calling card" for different cell types. This is crucial for diagnosing and classifying neoplasms, especially when morphology on H&E stain is ambiguous. It also guides targeted therapy and helps establish a prognosis. The choice of markers is tailored to the differential diagnosis based on the tumor's location and appearance.
| Tumor/Cell Type | Marker(s) |
|---|---|
| Carcinoma | Cytokeratin |
| Sarcoma | Vimentin |
| Muscle | Desmin |
| Glial Cells | GFAP |
| Neuroendocrine | Chromogranin, Synaptophysin |
| Prostate Cancer | PSA |
| Breast Cancer | ER, PR, Her2/neu |
| Proliferation Index | Ki-67 |
High‑Yield Points - ⚡ Biggest Takeaways
- Immunohistochemistry (IHC) uses antigen-antibody binding to visualize specific proteins in tissue, aiding in tumor diagnosis.
- Cytokeratin is the classic marker for tumors of epithelial origin (carcinomas).
- Vimentin is the characteristic marker for tumors of mesenchymal origin (sarcomas).
- S-100 is a key marker for cells of neural crest origin, such as melanoma and Schwannoma.
- CD markers (e.g., CD20, CD3) are essential for classifying lymphomas and leukemias.
- GFAP is a specific marker for glial cells and their tumors (e.g., astrocytoma).
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