Limited time75% off all plans
Get the app

Spectroscopy

On this page

Spectroscopy - What's Cooking Inside?

  • Principle: Non-invasive detection of tissue metabolite concentrations using magnetic resonance.
  • Nuclei:
    • Main: Proton ($^1$H MRS) for N-acetylaspartate (NAA), Choline (Cho), Creatine (Cr), Lactate.
    • Others: $^{31}$P (energy metabolism), $^{13}$C (glucose), $^{19}$F (drugs).
  • Signal: Spectrum graph of intensity vs. chemical shift (frequency in ppm). Each peak represents a metabolite.
  • MRS vs. MRI:
    • MRI: Maps water protons for anatomical structure.
    • MRS: Maps metabolite protons for biochemical information ("biochemical biopsy").

MRS spectrum with NAA, Cho, and Cr peaks

⭐ Key for differentiating tumor recurrence from radiation necrosis in brain imaging.

Spectroscopy - The Brain's Biomarkers

Magnetic Resonance Spectroscopy (MRS) non-invasively detects brain metabolites, offering insights into tissue biochemistry.

MetabolitePeak (ppm)Represents↑ in↓ in
N-acetylaspartate (NAA)2.0Neuronal viability/density---Neuronal damage/loss (tumors, stroke, MS, neurodegeneration)
Choline (Cho)3.2Cell membrane turnover/synthesisTumors, inflammation, demyelination---
Creatine (Cr/PCr)3.0 (major), 3.9Energy metabolism marker; Relatively stable, often used as internal reference------
Lactate (Lac)1.33 (doublet)Anaerobic glycolysisIschemia, hypoxia, high-grade tumors, abscess, mitochondrial disorders---
Lipids (Lip)0.9-1.5 (broad)Cell necrosis, membrane breakdownHigh-grade tumors, necrosis, abscess---
myo-Inositol (mI)3.56Glial cell marker, osmolyteGliosis, Alzheimer's, demyelinationHepatic encephalopathy
Glutamate/Glutamine (Glx)2.1-2.5, 3.6-3.8Excitatory neurotransmitters/metabolism; Altered in hepatic encephalopathy, epilepsy------

MRS brain spectroscopy metabolite peaks graph

⭐ Lactate peak at 1.33 ppm inverts with long TE (e.g., 144ms PRESS), distinguishing it from lipids.

Spectroscopy - Peeking with Precision

  • Localization:
    • SVS (Single Voxel): One ROI, good SNR. E.g., PRESS, STEAM.
    • CSI/MRSI (Multi-Voxel): Multiple voxels, spatial map, ↓SNR/voxel.
  • Pulse Sequences:
    • PRESS: ↑SNR (90°-180°-180° pulses), common.
    • STEAM: ↓SNR (three 90° pulses), shorter min TE.
  • Echo Time (TE):
    • Short TE (e.g., 20-35 ms): More metabolites (NAA, Cho, Cr, mI, Glx, Lip, Lac), complex baseline.
    • Long TE (e.g., 135-144 ms, 270-288 ms): Fewer metabolites (NAA, Cho, Cr, Lac). Lactate doublet inverts at TE 144/272 ms (key for Lac detection).
  • Interpretation: Peak area ∝ concentration. Ratios (e.g., $Cho/NAA$, $NAA/Cr$) vital.

⭐ In brain tumors, increased Cho/NAA and Cho/Cr ratios are characteristic, reflecting increased membrane turnover and decreased neuronal integrity.

MRS Spectroscopy Common Metabolite Peaks and Markers

Spectroscopy - MRS in Action

MRS spectra: Brain tumor vs. radiation necrosis

  • Brain Tumors: ↑ Cho, ↓ NAA, ↑ $Cho/NAA$ ratio, ↑ $Cho/Cr$ ratio. High-grade: Lac/Lip.
    • Recurrence: ↑ Cho.
    • Radiation Necrosis: ↓ Cho, ↓ NAA, ↓ Cr, prominent Lac/Lip.
  • Stroke/Ischemia: ↓ NAA, ↑ Lac (acute). Cho variable.
  • Infections:
    • Pyogenic Abscess: ↓ NAA/Cho/Cr; ↑ Lac, amino acids (0.9 ppm: Val, Leu, Ile), acetate, succinate.

      ⭐ Pyogenic abscess shows specific amino acids (Val, Leu, Ile) at 0.9 ppm.

    • Tuberculoma: ↑ Lipids, often ↑ Cho.
  • Demyelinating Diseases (e.g., MS):
    • Acute plaques: ↑ Cho, ↑ Lac, ↑ Lip, ↓ NAA.
    • Chronic plaques: ↓ NAA; myo-inositol (mI) may be ↑.
  • Neurodegenerative (e.g., Alzheimer's): ↓ NAA (posterior cingulate), ↑ mI.
  • Metabolic Disorders (e.g., Canavan disease): Markedly ↑ NAA.
  • Prostate Cancer: ↑ $(Cho+Cr)/Citrate$ ratio (malignancy). Healthy: High Citrate.

High‑Yield Points - ⚡ Biggest Takeaways

  • NAA (N-acetylaspartate): Neuronal marker; ↓ in most brain pathologies.
  • Choline (Cho): Cell membrane turnover marker; ↑ in tumors, inflammation.
  • Creatine (Cr): Stable reference peak for energy metabolism.
  • Lactate: Indicates anaerobic glycolysis (e.g., ischemia, abscess); characteristic doublet at 1.33 ppm, inverts on long TE.
  • Lipids: Signify necrosis (e.g., high-grade tumors, abscesses); broad peak at 0.9-1.4 ppm.
  • Myo-inositol (mI): Glial cell marker; ↑ in Alzheimer's disease, ↓ in tumors.
  • Short TE sequences display more metabolites; long TE (e.g., 144ms, 270ms) helps identify lactate and suppress other signals.

Unlock the full lesson and continue reading

Signup to continue reading this lesson and unlimited access questions, flashcards, AI notes, and more

Scan to download app

Scan to download
UNLOCK FREE ACCESS
Rezzy — Oncourse's AI Study Mate

Have doubts about this lesson?

Ask Rezzy, your AI Study Mate, to explain anything you didn't understand

Everything you need for NEET-PG prep

Get full Oncourse access with lessons, practice questions, flashcards and AI study tools.

GET STARTED FOR FREE