Genetics of Antimicrobial Resistance

Genetics of Antimicrobial Resistance

Genetics of Antimicrobial Resistance

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AMR Basics - Resistance Rising

  • Antimicrobial Resistance (AMR): Microbe's ability to survive drugs, rendering treatments ineffective.
  • Types:
    • Intrinsic: Natural insensitivity (e.g., Gram-negatives to Vancomycin via outer membrane).
    • Acquired: New resistance via genetic change (mutation, Horizontal Gene Transfer - HGT).
  • Impact: ↑ Treatment failure, ↑ morbidity/mortality, ↑ costs. Major global health threat.

⭐ Enzymatic inactivation (e.g., β-lactamases vs. penicillins) is a very common acquired resistance mechanism.

Resistance Mechanisms - Bugs' Smart Defenses

Mechanisms of Antimicrobial Resistance in Bacteria

Bacteria employ several key strategies to resist antimicrobial drugs:

MechanismActionKey Examples (Affected Drugs)
Enzymatic InactivationDegrade/modify drugβ-lactamases (β-lactams); AMEs (Aminoglycosides)
Target ModificationAlter drug's binding sitePBP2a (mecA) in MRSA (β-lactams); VanA/B in VRE (Vancomycin)
Efflux PumpsPump drug out of cellTetracyclines, Macrolides, Fluoroquinolones
Decreased Permeability↓ Drug entry (e.g., porin loss)β-lactams, Fluoroquinolones (Gram-negatives)
Target ProtectionShield drug target from antibioticQnr proteins (Fluoroquinolones)

Genetic Players - Resistance Gene Carriers

  • Location of Resistance Genes:
    • Chromosomal: Intrinsic resistance or acquired via mutation. Generally less mobile.
    • Extrachromosomal (Mobile Genetic Elements - MGEs): Primary drivers of rapid resistance spread.
      • Plasmids: Self-replicating, circular DNA. Often carry multiple resistance genes (e.g., R-factors).

        ⭐ Plasmids are pivotal in the horizontal transfer of resistance to multiple antibiotic classes (e.g., genes encoding ESBLs, NDM-1).

      • Transposons ("Jumping Genes"): DNA segments that can move within or between genomes (chromosome or plasmid). Carry resistance genes (e.g., $Tn_3$ for ampicillin resistance).
      • Integrons: Genetic elements that capture and express gene cassettes, including those encoding antimicrobial resistance. Frequently found within transposons or plasmids.
        • Class 1 integrons are the most prevalent in clinical isolates.

Mechanisms of horizontal gene transfer of ARGs

Gene Transfer - Spreading the Bad News

Horizontal Gene Transfer (HGT) is the primary way bacteria acquire and spread antimicrobial resistance genes, distinct from vertical inheritance. Key mechanisms:

  • Transformation: Competent bacteria directly uptake naked DNA fragments (e.g., from lysed cells) from their environment.
  • Transduction: Bacteriophages (bacterial viruses) accidentally transfer bacterial DNA from one bacterium to another.
    • Generalized: Any bacterial gene can be transferred.
    • Specialized: Only genes adjacent to the prophage integration site are transferred.
  • Conjugation: "Bacterial mating." Direct transfer of genetic material (often plasmids like R-factors) between bacteria via a sex pilus. 📌 F-factor dependent.

⭐ Plasmids carrying multiple resistance genes (MDR plasmids) are a major clinical concern, often spread by conjugation.

High‑Yield Points - ⚡ Biggest Takeaways

  • Horizontal Gene Transfer (HGT) via conjugation, transduction, transformation is key for rapid spread.
  • Plasmids (R-factors), transposons, and integrons are crucial mobile genetic elements.
  • Mechanisms: Enzyme inactivation (β-lactamases like ESBLs, carbapenemases), target modification (PBP2a in MRSA).
  • Other mechanisms: Active efflux pumps, decreased permeability, and target bypass.
  • Chromosomal mutations (e.g., gyrA for fluoroquinolones) also confer resistance.
  • Vancomycin resistance (e.g., vanA gene) in staphylococci is a major concern.

Practice Questions: Genetics of Antimicrobial Resistance

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Flashcards: Genetics of Antimicrobial Resistance

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