Classification of Microorganisms

Classification of Microorganisms

Classification of Microorganisms

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Foundations - Kingdoms & Domains Galore

  • Traditional Systems:
    • Linnaeus: Two Kingdoms (Plantae, Animalia).
    • Whittaker (1969): Five Kingdoms, based on cell structure, mode of nutrition, body organization.
      • Monera (prokaryotic, unicellular)
      • Protista (eukaryotic, mostly unicellular)
      • Fungi (eukaryotic, saprophytic, chitin cell wall)
      • Plantae (eukaryotic, photosynthetic, cellulose cell wall)
      • Animalia (eukaryotic, heterotrophic, no cell wall)
  • Modern System: Three Domains (Carl Woese, 1977):
    • Based on 16S rRNA (prokaryotes) & 18S rRNA (eukaryotes) gene sequencing.
    • Bacteria: Prokaryotic, peptidoglycan cell walls.
    • Archaea: Prokaryotic, distinct cell wall lipids, often extremophiles.
    • Eukarya: Eukaryotic cells; includes Protista, Fungi, Plantae, Animalia.

⭐ Carl Woese proposed the three-domain system (Bacteria, Archaea, Eukarya) based on differences in 16S rRNA sequences.

Phylogenetic Tree of Life: Bacteria, Archaea, Eukarya

Bacteria - Gram's Colorful Crew

⭐ Gram-positive bacteria have a thick peptidoglycan layer and teichoic acids, while Gram-negative bacteria have a thin peptidoglycan layer and an outer membrane containing Lipopolysaccharide (LPS).

  • Gram Staining: Differentiates bacteria based on cell wall composition.
    • Gram-Positive (G+):
      • Thick peptidoglycan layer.
      • Teichoic & lipoteichoic acids.
      • Stain Purple/Blue.
      • Examples: Staphylococcus, Streptococcus, Clostridium.
    • Gram-Negative (G-):
      • Thin peptidoglycan layer.
      • Outer membrane with Lipopolysaccharide (LPS - Endotoxin).
      • Periplasmic space.
      • Stain Pink/Red.
      • Examples: E. coli, Salmonella, Pseudomonas.
  • Atypical Bacteria: Poorly staining/non-staining.
    • Mycoplasma (no cell wall), Mycobacteria (acid-fast), Spirochetes (too thin), Chlamydia, Rickettsia (intracellular).
  • 📌 Mnemonic: Positive Purple; Negative piNk.

Gram stain showing cocci and bacilli

Viruses - Not Quite Alive

  • Acellular, obligate intracellular parasites; not truly living organisms.
  • Lack metabolic machinery; hijack host cell for replication (protein synthesis, energy).
  • Core components:
    • Nucleic acid: DNA or RNA (single-stranded (ss) or double-stranded (ds)).
    • Capsid: Protein shell; protects genome, aids in entry.
    • Envelope (optional): Lipid layer; derived from host cell membrane.
  • Key classification criteria:
    • Genome type & strandedness (e.g., ssRNA, dsDNA).
    • Capsid morphology (e.g., icosahedral, helical, complex).
    • Presence/absence of envelope. Basic virus structure: non-enveloped and enveloped

⭐ Baltimore Classification categorizes viruses based on their mRNA synthesis pathway. Key exceptions: Parvoviridae (ssDNA), Reoviridae (dsRNA).

Fungi & Parasites - Frenemies & Freeloaders

  • Fungi: Eukaryotes; chitin cell wall, ergosterol in cell membrane. Often opportunistic.
    • Forms:
      • Yeasts: Unicellular, budding. Candida, Cryptococcus.
      • Molds: Multicellular, hyphae (septate/aseptate), spores. Aspergillus, Mucorales.
      • Dimorphic:

        ⭐ Dimorphic fungi exist as 'Mold in the Cold (environment, 25°C)' and 'Yeast in the Heat (host tissue, 37°C)'. Examples: Histoplasma, Blastomyces, Coccidioides, Sporothrix.

    • Mycoses: Superficial, cutaneous, subcutaneous, systemic infections.
  • Parasites: Eukaryotes; host-dependent, complex life cycles.
    • Protozoa (unicellular):
      • Amoebae: E. histolytica (dysentery).
      • Flagellates: Giardia, Trichomonas, Trypanosoma, Leishmania (sandfly vector).
      • Apicomplexa: Plasmodium (malaria; mosquito vector), Toxoplasma, Cryptosporidium.
    • Helminths (worms):
      • Nematodes (round): Ascaris, Hookworms, Enterobius.
      • Cestodes (tape): Taenia spp. (cysticercosis), Echinococcus (hydatid).
      • Trematodes (flukes): Schistosoma, Fasciola. Fungal Morphology and Temperature Effects and Parasites (protozoa, helminth examples) microscopic views)

High‑Yield Points - ⚡ Biggest Takeaways

  • Whittaker's five-kingdom classification (Monera, Protista, Fungi, Plantae, Animalia) is key.
  • Carl Woese's three-domain system (Bacteria, Archaea, Eukarya) uses 16S rRNA sequences.
  • Phenotypic classification: morphology, staining (Gram, ZN), biochemical tests.
  • Genotypic methods (PCR, sequencing) offer precise identification and relatedness.
  • Bergey's Manual is the standard reference for bacterial taxonomy.
  • Viruses: acellular, obligate intracellular parasites; classified by nucleic acid, capsid, envelope.
  • Prions (infectious proteins) and viroids (infectious RNA) are unique pathogens.

Practice Questions: Classification of Microorganisms

Test your understanding with these related questions

A 27-year-old intravenous drug user presents with difficulty swallowing. Examination of the oropharynx reveals white plaques along the tongue and the oral mucosa. Which of the following best describes the microscopic appearance of the microorganism responsible for this patient's illness?

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Flashcards: Classification of Microorganisms

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_____ staining procedures can be used to visualise cell walls

TAP TO REVEAL ANSWER

_____ staining procedures can be used to visualise cell walls

Differential (Simple/Differential)

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