Microbial Ecology

On this page

Microbial Ecology Foundations - Eco Essentials

  • Microbial Ecology: Study of microbes, their interactions with each other & their environment.
  • Ecosystem: Biotic community & its abiotic (non-living) environment.
  • Habitat: Physical location where a microbial population lives.
  • Niche: Functional role of a microbe within its habitat.
  • Microbial Community: Assemblage of different microbial populations interacting in a given environment.
  • Population: Group of individual microbial cells of the same species.
  • Biodiversity:
    • Alpha ($\alpha$): Species richness within a single habitat/sample.
    • Beta ($\beta$): Difference in species composition between habitats.
    • Gamma ($\gamma$): Total species diversity in a landscape (across habitats).
  • Major Microbial Habitats:
    • Soil (e.g., Rhizosphere)
    • Aquatic (Freshwater, Marine - Photic/Aphotic zones)
    • Atmospheric
    • Host-associated (e.g., Gut, Skin)

Microbial interactions in soil and their ecological roles

⭐ The vast majority of microbial life remains uncultured (the great plate count anomaly).

Microbial Interactions - Mingling & Mayhem

  • Symbiosis: Close, long-term interaction between species. 📌 MCP: Mutualism, Commensalism, Parasitism.
    • Mutualism (+/+): Both benefit. E.g., Lichens (algae/fungi), mycorrhizae, gut flora.
    • Commensalism (+/0): One benefits, other unaffected. E.g., Skin flora (S. epidermidis).
    • Parasitism (+/-): One (parasite) benefits, other (host) harmed. E.g., Pathogens (Plasmodium).
  • Antagonism: One organism negatively impacts another.
    • Competition (-/- or -/0): For limited resources. E.g., E. coli strains.
    • Amensalism (Antibiosis) (0/-): One produces substance (antibiotic) harmful to another, itself unaffected. E.g., Penicillium.
    • Predation (+/-): Predator engulfs/attacks prey. E.g., Bdellovibrio.
  • Neutralism (0/0): Coexistence with no effect on each other; rare.

Microbial Interaction Types Diagram

⭐ Syntrophy is a special case of mutualism where two or more microbes cooperate to degrade a substance that neither can alone.

Biogeochemical Cycles - Elemental Envoys

Microbes are crucial for global nutrient recycling, transforming elements.

  • Nitrogen Cycle: Essential for proteins & nucleic acids.

    • 📌 Mnemonic: 'No NAP': Nitrification (Nitrosomonas, Nitrobacter), N-fixation (Azotobacter, Rhizobium), Ammonification, Denitrification (Pseudomonas).

    ⭐ Denitrification (e.g., by Pseudomonas) is an anaerobic process that converts $NO_3^-$ to $N_2$ gas, returning it to the atmosphere.

  • Carbon Cycle: Backbone of organic molecules.

    • $CO_2$ Fixation: By photoautotrophs (e.g., Cyanobacteria) & chemoautotrophs.
    • Methanogenesis (Anaerobic Archaea, e.g., Methanobacterium): Organic C or $CO_2 \rightarrow CH_4$. E.g., $CO_2 + 4H_2 \rightarrow CH_4 + 2H_2O$.
    • Methane Oxidation (Methanotrophs, e.g., Methylococcus): $CH_4 + 2O_2 \rightarrow CO_2 + 2H_2O$.
  • Sulfur Cycle: For key amino acids.

    • Oxidation of $H_2S$: $H_2S \rightarrow S^0 \rightarrow SO_4^{2-}$ (e.g., Thiobacillus).
    • Sulfate Reduction (Anaerobic): $SO_4^{2-} \rightarrow H_2S$ (e.g., Desulfovibrio).
  • Phosphorus Cycle: For nucleic acids, ATP.

    • Solubilization of inorganic $PO_4^{3-}$ (e.g., Pseudomonas, Bacillus).
    • Mineralization of organic P to $PO_4^{3-}$.

Sulfur Cycle Diagram

Microbial Communities & Biofilms - Slime Scene

  • Biofilm: Structured community of microorganisms encased in self-produced Extracellular Polymeric Substances (EPS), adherent to a surface.

  • Formation Stages 📌 Mnemonic: All Cats Meow Deliciously (Attachment, Colonization, Maturation, Dispersal).

  • Key Features:

    • EPS: Polysaccharides, proteins, DNA, lipids; provides structure & protection.
    • ↑ Resistance: To antibiotics, disinfectants, host defenses.

    ⭐ Bacteria within biofilms can be up to 1000 times more resistant to antibiotics than their planktonic counterparts.

  • Quorum Sensing (QS): Cell-to-cell communication using autoinducers (e.g., AHLs, AIPs); regulates biofilm formation, virulence.

  • Significance: Dental plaque, catheter infections (e.g., Staphylococcus epidermidis), cystic fibrosis (Pseudomonas aeruginosa), biofouling, bioremediation.

image

High‑Yield Points - ⚡ Biggest Takeaways

  • Niche is functional role; Habitat is the physical address.
  • Biofilms: Microbial communities in Extracellular Polymeric Substances (EPS), confer ↑ drug resistance & persistence.
  • Quorum sensing: Cell-density dependent coordination of bacterial gene expression.
  • Microbes are key in biogeochemical cycles (N, C, S, P); e.g., nitrogen fixation, nitrification.
  • Symbiosis (mutualism, commensalism, parasitism) is crucial; e.g., gut microbiota aiding digestion.
  • Indicator organisms (e.g., E. coli, coliforms) signal fecal contamination in water.
  • Bioremediation: Using microbes to degrade environmental pollutants like oil spills or pesticides.
Rezzy AI Tutor

Have doubts about this lesson?

Ask Rezzy, our AI tutor, to explain anything you didn't understand

Practice Questions: Microbial Ecology

Test your understanding with these related questions

Which enzyme in the Krebs cycle is indirectly affected by hyperammonemia due to its impact on metabolic pathways?

1 of 5

Flashcards: Microbial Ecology

1/5

_____ test is also known as differential coliform test.

TAP TO REVEAL ANSWER

_____ test is also known as differential coliform test.

Eijkman

browseSpaceflip

Enjoying this lesson?

Get full access to all lessons, practice questions, and more.

Start For Free
Microbial Ecology - Free Indian Medical PG Review