Aquatic Microbiology

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Aquatic Habitats & Microbes - Diverse Water Worlds

  • Freshwater Systems:
    • Lakes (lentic): Exhibit thermal stratification.
      • Epilimnion (surface): Aerobic; cyanobacteria, algae, heterotrophic bacteria.
      • Hypolimnion (bottom): Anaerobic; methanogens, sulfate-reducers.
    • Rivers (lotic): Dynamic; biofilms on surfaces, influenced by terrestrial input.
  • Marine Systems:
    • Oceans: Vast, diverse zones.
      • Photic zone: Dominated by phytoplankton (e.g., Prochlorococcus, diatoms), viral lysis common.
      • Aphotic/Deep sea: High pressure (piezophiles), low temperature (psychrophiles); chemolithoautotrophy at hydrothermal vents.
    • Estuaries: Brackish, fluctuating salinity; high microbial activity.
  • Groundwater: Often oligotrophic; unique chemolithoautotrophs. Lake stratification and microbial zones diagram

Prochlorococcus, a picocyanobacterium, is the smallest and most abundant photosynthetic organism on Earth, responsible for a large fraction of marine primary production.

Water Quality & Indicators - Tiny Health Monitors

  • Indicator Organisms: Microbes whose presence signals potential faecal contamination & associated pathogens.
    • Ideal: Easy to detect, non-pathogenic, survives like pathogens, faecal-specific.
  • Key Indicators:
    • Total Coliforms: General hygiene indicator.
    • Faecal Coliforms: Thermotolerant (grow at 44.5°C), indicate faecal origin.
    • Escherichia coli: Specific to faecal contamination; most reliable.
    • Faecal Streptococci (Enterococci): Indicate faecal pollution, more resistant.
    • Clostridium perfringens: Spores indicate past/intermittent pollution.
  • Testing Methods:
    • MPN (Most Probable Number): Estimates density.
    • Membrane Filtration: Direct viable count.
    • Presence-Absence Test.
    • IMViC: Differentiates E. coli.

Escherichia coli is the most reliable indicator of recent faecal pollution in drinking water due to its exclusive faecal origin and shorter survival time outside the host.

E. coli bacteria under microscope

Waterborne Pathogens - Invisible Threats Lurking

Contaminated water harbors diverse pathogens. 📌 Key Types: Bacteria, Viruses, Protozoa.

  • Bacteria:
    • Vibrio cholerae: Cholera ("rice-water stools", severe dehydration)
    • Salmonella typhi: Typhoid fever (step-ladder pyrexia, rose spots)
    • Shigella spp.: Shigellosis (bacillary dysentery, tenesmus)
    • E. coli (ETEC, EHEC): Diarrhea (traveler's, HUS from O157:H7)
    • Campylobacter jejuni: Gastroenteritis (common, Guillain-Barré link)
    • Leptospira interrogans: Leptospirosis (Weil's disease: jaundice, renal failure)
  • Viruses:
    • Hepatitis A & E: Acute viral hepatitis (fecal-oral)
    • Rotavirus: Severe infantile diarrhea (vaccine-preventable)
    • Norovirus: Epidemic gastroenteritis ("winter vomiting bug")
  • Protozoa:
    • Giardia lamblia: Giardiasis (foul-smelling steatorrhea, "beaver fever")
    • Entamoeba histolytica: Amoebiasis (dysentery, liver abscess)
    • Cryptosporidium parvum: Cryptosporidiosis (watery diarrhea, severe in AIDS CD4 < 100)

Microscopic view of Giardia lamblia

⭐ Hepatitis E virus (HEV) infection in pregnant women (3rd trimester) carries high mortality (up to 20-30%).

Biofilms & Water Treatment - Slime & Shine

  • Biofilms: Structured microbial communities encased in self-produced Extracellular Polymeric Substance (EPS), offering protection.
    • Formation Stages: Attachment → Colonization (Quorum Sensing vital) → Maturation (complex 3D architecture) → Dispersal.
    • Significance: ↑ Antimicrobial resistance (e.g., Pseudomonas), persistent infections, medical device/pipe biofouling.
  • Water Treatment Process: Essential multi-barrier approach for safe drinking water.
-   Key Disinfection Methods:
    -   Chlorination: Must achieve breakpoint for adequate free residual chlorine.
    -   UV Radiation: Damages microbial DNA, preventing replication.
    -   Ozone ($O_3$): Powerful, broad-spectrum oxidizing agent.

⭐ Breakpoint chlorination is critical: chlorine demand satisfied, further addition gives proportional free residual chlorine (target 0.2-0.5 mg/L) for sustained disinfection. Bacterial biofilm EPS matrix components and functions 📌 Smart Chemists Study Fluids Diligently (Screening, Coagulation, Sedimentation, Filtration, Disinfection)

High‑Yield Points - ⚡ Biggest Takeaways

  • Indicator organisms (e.g., E. coli) signal fecal contamination and assess water quality.
  • Key waterborne diseases: cholera, typhoid, hepatitis A/E, shigellosis.
  • Biofilms in water systems harbor pathogens, aiding antimicrobial resistance.
  • Eutrophication causes algal blooms; some produce cyanotoxins.
  • Legionella pneumophila in water systems causes Legionnaires' disease.
  • Leptospirosis is transmitted via water contaminated with infected animal urine.
  • Water purification (chlorination, filtration) is vital for disease prevention.

Practice Questions: Aquatic Microbiology

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Which of the following diseases has the largest submerged portion in the iceberg model of disease?

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Flashcards: Aquatic Microbiology

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Transmission of _____ occurs via aersols from environmental water sources

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Transmission of _____ occurs via aersols from environmental water sources

Legionella pneumophila

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