Disorders of Purine and Pyrimidine Metabolism

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Purine Power-Up - De Novo & Salvage

Purines (Adenine, Guanine) are made via De Novo or Salvage pathways. 📌 Purines PURE As Gold (2 rings).

  • De Novo Synthesis: (Builds from scratch)

    • $Ribose-5-P + ATP \xrightarrow{PRPP \text{ Synthetase}} PRPP$
    • $PRPP + Gln \xrightarrow{GPAT (\text{Rate-limiting})} 5-Phosphoribosylamine \rightarrow \dots \rightarrow IMP$
    • IMP Dehydrogenase: crucial for GMP synthesis from IMP.

    ⭐ IMP is the parent purine nucleotide; AMP & GMP derive from it.

  • Salvage Pathway: (Recycles bases with PRPP)

    • Hypoxanthine/Guanine $+ PRPP \xrightarrow{HGPRT} IMP/GMP$.
    • Adenine $+ PRPP \xrightarrow{APRT} AMP$.

Purine Synthesis Pathways and Key Enzymes

Purine Disorders - Gouty Gremlins & More

  • Gout: Hyperuricemia (serum uric acid > 6.8 mg/dL) → monosodium urate (MSU) crystal deposition.

    • Causes: Overproduction or underexcretion of uric acid.
    • Acute: Inflammatory arthritis (podagra - 1st MTP joint).
    • Chronic: Tophaceous gout, nephropathy.
    • Diagnosis: Synovial fluid: needle-shaped, negatively birefringent MSU crystals. Gout vs. Pseudogout Crystals Microscopy Gout pathogenesis and clinical manifestations
    • Treatment:
      • Acute: NSAIDs, colchicine, steroids.
      • Chronic: Allopurinol, febuxostat (xanthine oxidase inhibitors); probenecid (uricosuric).
    • 📌 Gout: Painful Tophi & Podagra.
  • Lesch-Nyhan Syndrome (LNS):

    • Defect: HGPRT (Hypoxanthine-Guanine Phosphoribosyltransferase) deficiency; X-linked recessive.
    • Features: Hyperuricemia, self-mutilation, choreoathetosis, intellectual disability, dystonia, gout.
    • 📌 HGPRT - He's Got Purine Recovery Trouble. Oral self-mutilation in Lesch-Nyhan syndrome
  • Adenosine Deaminase (ADA) Deficiency:

    • Defect: ADA deficiency → ↑dATP accumulation.
    • Result: Lymphotoxicity (T, B, and NK cells) → Severe Combined Immunodeficiency (SCID). Autosomal recessive.

⭐ Allopurinol and febuxostat are xanthine oxidase inhibitors used in chronic gout management.

Pyrimidine Production - Base Building Blocks

  • De Novo Synthesis (Cytosol):
    • Reactants: Glutamine, $CO_2$, Aspartate.
    • Product: Uridine Monophosphate (UMP).
    • Key Enzymes:
      • Carbamoyl Phosphate Synthetase II (CPS-II): Rate-limiting step.
      • Aspartate Transcarbamoylase (ATCase).
      • Dihydroorotate Dehydrogenase (Mitochondrial inner membrane).
      • UMP Synthase (bifunctional: orotate phosphoribosyltransferase & OMP decarboxylase).
  • Regulation:
    • CPS-II: Activated by ATP, PRPP; Inhibited by UTP, CTP.
  • 📌 Mnemonics:
    • CPS I: mItochondria (Urea cycle). CPS II: cYtosol (pYrimidine synthesis).
    • Pyrimidines CUT Pye: Cytosine, Uracil, Thymine (1 ring).

Pyrimidine de novo synthesis pathway

⭐ UMP synthase is a bifunctional enzyme with orotate phosphoribosyltransferase & OMP decarboxylase activities. This is a common site for genetic defects leading to orotic aciduria type I (megaloblastic anemia unresponsive to B12/folate, growth retardation, orotic acid crystals in urine).

Pyrimidine Problems & Pharma - Orotic Oddities & Options

  • Orotic Aciduria: Autosomal recessive.
    • Deficiency: UMP synthase (orotate phosphoribosyltransferase & OMP decarboxylase activity).
    • Symptoms: ↑ Orotic acid in urine (crystals), megaloblastic anemia (B12/folate resistant), failure to thrive. Megaloblastic anemia peripheral smear
    • Treatment: Uridine supplementation (bypasses block).
    • 📌 Mnemonic: "Orotic acid in urine, give Uridine to bypass block, improve symptoms."
  • Drug Targets in Pyrimidine Pathway:
    • 5-Fluorouracil (5-FU): Inhibits thymidylate synthase (↓dTMP).
    • Methotrexate: Inhibits dihydrofolate reductase (↓THF for pyrimidine/purine synthesis).
    • Hydroxyurea: Inhibits ribonucleotide reductase.
    • Leflunomide: Inhibits dihydroorotate dehydrogenase.

    ⭐ Leflunomide inhibits dihydroorotate dehydrogenase, a key mitochondrial enzyme in de novo pyrimidine synthesis.

High‑Yield Points - ⚡ Biggest Takeaways

  • Lesch-Nyhan syndrome: HGPRT deficiency (X-linked), self-mutilation, hyperuricemia, choreoathetosis.
  • Adenosine Deaminase (ADA) deficiency: Leads to SCID via ↑dATP, inhibiting ribonucleotide reductase.
  • Gout: Characterized by hyperuricemia and needle-shaped monosodium urate crystals (negatively birefringent).
  • Allopurinol and febuxostat inhibit xanthine oxidase, reducing uric acid production.
  • Orotic Aciduria: UMP synthase deficiency causes megaloblastic anemia (B12/folate resistant) and ↑orotic acid; treat with uridine.
  • Carbamoyl Phosphate Synthetase II (CPS II): Rate-limiting enzyme of de novo pyrimidine synthesis in the cytoplasm.
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Practice Questions: Disorders of Purine and Pyrimidine Metabolism

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Which vitamin deficiency leads to megaloblastic anemia?

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Flashcards: Disorders of Purine and Pyrimidine Metabolism

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_____ is due to defect of the enzyme isovaleryl-coA dehydrogenase

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_____ is due to defect of the enzyme isovaleryl-coA dehydrogenase

Isovaleric aciduria

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Disorders of Purine and Pyrimidi... - Free Indian Medical PG