Laboratory techniques in pathology

Laboratory techniques in pathology

Laboratory techniques in pathology

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Tissue Processing - From Biopsy to Slide

  • Goal: To preserve tissue structure and prepare it for microscopic examination.
  • Process: A sequential replacement of fluids within the tissue.
  • Fixation: 10% neutral buffered formalin is standard; prevents autolysis.
  • Dehydration: Ascending grades of alcohol remove water.
  • Clearing: Xylene removes alcohol, making tissue translucent.
  • Embedding: Infiltration with molten paraffin wax, which then solidifies into a block.
  • Sectioning: Microtome cuts sections at 4-5 micrometers.

High-Yield: Fixation artifacts are a major pitfall. Inadequate or delayed fixation can cause nuclear bubbling and cell shrinkage, mimicking pathological changes and confounding diagnosis.

Histological Stains - The Colour of Disease

  • Hematoxylin & Eosin (H&E): The foundational stain.

    • Hematoxylin (base): Stains acidic structures (e.g., DNA, RNA in nucleus) blue (basophilic).
    • Eosin (acid): Stains basic structures (e.g., cytoplasm, collagen) pink (eosinophilic).
  • Special Stains:

    • Periodic Acid-Schiff (PAS): Stains glycogen, fungi, and basement membranes magenta.
    • Prussian Blue: Stains iron (hemosiderin) blue.
    • Masson Trichrome: Stains collagen blue/green, distinguishing it from muscle/keratin (red).
    • Congo Red: Stains amyloid salmon-pink.
    • Silver Stains (GMS): Stains fungi and reticular fibers black.

Fluorescent image of amyloid fibrils with Congo Red

⭐ Under polarized light, Congo Red-stained amyloid exhibits classic apple-green birefringence, a pathognomonic finding for amyloidosis.

Immunohistochemistry (IHC) - Antibody Power‑Plays

  • Principle: Utilizes specific antibody-antigen binding to visualize proteins in tissue sections. A primary antibody targets the antigen, and an enzyme-conjugated secondary antibody binds to the primary one. Addition of a chromogen results in a colored precipitate at the antigen's location.

Immunohistochemistry and Immunofluorescence methods

  • Key Markers & Associated Tumors:
    • Cytokeratin: Epithelial cells (Carcinomas)
    • Vimentin: Mesenchymal cells (Sarcomas)
    • Desmin: Muscle (Rhabdomyosarcoma)
    • GFAP: Glial cells (Astrocytoma)
    • S-100: Neural crest origin (Melanoma, Schwannoma)
    • CD markers: Hematolymphoid cells (Leukemias, Lymphomas)

Exam Favorite: In a poorly differentiated malignant neoplasm, IHC is critical. A tumor positive for Cytokeratin but negative for Vimentin is a Carcinoma, not a Sarcoma.

Molecular Techniques - Decoding the Cell

  • Polymerase Chain Reaction (PCR): Exponentially amplifies specific DNA segments. Essential for detecting low-titer infections (e.g., HIV), genetic mutations, and in forensics.
  • Blotting Techniques: Used to separate and identify specific molecules.
    • 📌 Mnemonic: Southern → DNA, Northern → RNA, Western → Protein (SNoW DRoP).
  • Fluorescence in situ Hybridization (FISH): Fluorescent probes bind to specific DNA sequences on chromosomes. Used to identify aneuploidy (e.g., trisomy 21), translocations (e.g., BCR-ABL), or deletions. FISH technique: Probe hybridization and visualization
  • Microarray: Assesses expression levels of thousands of genes simultaneously. Key for analyzing tumor gene expression profiles.

⭐ A positive ELISA screen for HIV is confirmed with a Western blot, which detects specific viral proteins (e.g., p24, gp41).

High‑Yield Points - ⚡ Biggest Takeaways

  • H&E is the cornerstone stain, with hematoxylin staining nuclei blue and eosin staining cytoplasm pink.
  • Immunohistochemistry (IHC) uses antibodies to identify specific proteins (antigens), crucial for tumor classification.
  • Flow cytometry is essential for leukemia and lymphoma analysis, sorting cells by surface markers.
  • Electron microscopy reveals ultrastructural details, key for diagnosing glomerular diseases.
  • PCR amplifies nucleic acids to detect infections and gene mutations.
  • Frozen sections provide a rapid intraoperative diagnosis, guiding surgical decisions.

Practice Questions: Laboratory techniques in pathology

Test your understanding with these related questions

An investigator studying the molecular characteristics of various malignant cell lines collects tissue samples from several families with a known mutation in the TP53 tumor suppressor gene. Immunohistochemical testing performed on one of the cell samples stains positive for desmin. This sample was most likely obtained from which of the following neoplasms?

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Flashcards: Laboratory techniques in pathology

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In flow cytometry, antibodies are tagged with a unique _____, which is detected and counted during analysis

TAP TO REVEAL ANSWER

In flow cytometry, antibodies are tagged with a unique _____, which is detected and counted during analysis

fluorescent dye

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