Cell-free DNA screening

Cell-free DNA screening

Cell-free DNA screening

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cfDNA Basics - Fetal DNA Sneak Peek

  • What it is: Small fragments of circulating DNA in the maternal bloodstream, a mix of maternal and placental DNA.
  • Source: Primarily from apoptosis of placental trophoblasts, releasing fetal genetic material.
  • Timing: Can be reliably detected as early as 10 weeks gestation.
  • Fetal Fraction (FF): The proportion of cfDNA that is of fetal origin.
    • A result requires a minimum FF, typically >4%, for accuracy.

⭐ High-yield fact: A low fetal fraction, which can be caused by high maternal BMI, is a primary reason for cfDNA test failure or an inconclusive result.

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The NIPS Test - How, When & What

  • What: Non-Invasive Prenatal Screening (NIPS) analyzes cell-free DNA (cfDNA) from the placenta circulating in maternal blood. Primarily screens for common fetal aneuploidies.
  • When: Can be performed as early as 10 weeks gestation.
  • Screens For:
    • Trisomy 21 (Down syndrome)
    • Trisomy 18 (Edwards syndrome)
    • Trisomy 13 (Patau syndrome)
    • Sex chromosome aneuploidies (e.g., Turner syndrome)

⭐ NIPS is a screening test, not diagnostic. A high-risk result requires confirmation with diagnostic testing like chorionic villus sampling (CVS) or amniocentesis.

Cell-free DNA screening process for prenatal testing

Performance & Pitfalls - Reading Between the Lines

  • Excellent detection rates (DR) for common trisomies: >99% for Trisomy 21, ~97% for T18, ~92% for T13.
    • Lower performance for sex chromosome aneuploidies & microdeletions.
  • ⚠️ It remains a screening test; positive results mandate diagnostic testing (amniocentesis/CVS).
  • Pitfalls:
    • False Positives (FP): Confined placental mosaicism, vanishing twin, maternal malignancy.
    • False Negatives (FN) / No-Call Results: Often due to low fetal fraction (<4%). A no-call result itself is a soft marker for aneuploidy.

⭐ Positive Predictive Value (PPV) is critically dependent on a priori risk (i.e., maternal age, other screening). A positive result in a low-risk patient has a significantly lower PPV than in a high-risk patient.

Clinical Pathway - From Result to Action

  • Primary Action Driver: Test result (high vs. low risk) and patient counseling are paramount.
  • Inconclusive/No-Call Result: Occurs in 1-8% of cases, often due to low fetal fraction. Options include redraw, offering diagnostic testing, or ultrasound.

⭐ cfDNA is a screening, not diagnostic, tool. The Positive Predictive Value (PPV) varies greatly with aneuploidy prevalence. A high-risk result for Trisomy 21 in a 40-year-old may have a PPV of >90%, but for a rare condition, it could be <10%.

High‑Yield Points - ⚡ Biggest Takeaways

  • Cell-free DNA (cfDNA) is a non-invasive prenatal screening test analyzing fetal DNA in maternal blood, offered at ≥10 weeks gestation.
  • It demonstrates high sensitivity and specificity for common fetal aneuploidies, particularly trisomy 21.
  • Remember, cfDNA is a screening test, not diagnostic; it indicates risk, but does not provide a definitive diagnosis.
  • Positive results require confirmation with diagnostic testing like amniocentesis or chorionic villus sampling (CVS).
  • Test failure can occur due to low fetal fraction.

Practice Questions: Cell-free DNA screening

Test your understanding with these related questions

A newlywed couple comes to your office for genetic counseling. Both potential parents are known to be carriers of the same Cystic Fibrosis (CF) mutation. What is the probability that at least one of their next three children will have CF if they are all single births?

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Flashcards: Cell-free DNA screening

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Edward syndrome and Patau syndrome present with _____ free -hCG

TAP TO REVEAL ANSWER

Edward syndrome and Patau syndrome present with _____ free -hCG

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