Skin microbiome

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Skin Microbiome - Our Living Shield

  • Primary Colonizers: Predominantly Gram-positive bacteria, tolerant of dry, high-salt conditions.
    • Sebaceous (oily) areas: Propionibacterium (e.g., P. acnes), Staphylococcus spp.
    • Moist areas (axilla, groin): Staphylococcus spp., Corynebacterium spp.
    • Dry areas (forearm): Mixed flora, lower density.
  • Protective Functions:
    • Competes with pathogens for nutrients & binding sites.
    • Produces antimicrobial peptides (AMPs).
    • Modulates the host immune response.

High-Yield: Staphylococcus epidermidis, a key resident, produces bacteriocins that inhibit S. aureus colonization and can help prevent skin infections.

Skin microbiome composition across different body sites

Key Inhabitants - The Usual Suspects

The skin is dominated by a few key players, primarily bacteria and fungi, adapted to its dry, slightly acidic, and lipid-rich environment.

Organism GroupKey SpeciesCharacteristics & Clinical Relevance
Bacteria (Gram +)Staphylococcus epidermidisCoagulase-negative. Most abundant skin commensal. Forms biofilms on catheters and prosthetic devices.
Cutibacterium acnesAnaerobic rod found in sebaceous glands. Associated with acne vulgaris by hydrolyzing triglycerides.
Corynebacterium spp.Diphtheroids; aerobic rods. Contribute to body odor.
Staphylococcus aureusCoagulase-positive. Colonizes nares and moist areas. Can be a pathogen (e.g., MRSA).
Fungi (Yeast)Malassezia spp.Lipophilic yeast. Most common fungus. Causes pityriasis (tinea) versicolor ("spaghetti and meatballs" on KOH prep).
ArthropodsDemodex folliculorumMicroscopic mite in hair follicles. Usually asymptomatic.

Exam Favorite: Staphylococcus epidermidis is a notorious contaminant of blood cultures and a primary cause of endocarditis on prosthetic heart valves and infections of other indwelling devices due to its potent biofilm-forming ability.

📌 Mnemonic: "Skin's Common Microbes": Staph, Corynebacterium/Cutibacterium, Malassezia.

Clinical Correlations - When Good Microbes Go Bad

Dysbiosis, an imbalance in normal flora, can lead to opportunistic infections, especially in immunocompromised individuals or when skin barriers are breached.

  • Staphylococcus epidermidis
    • Forms biofilms on prosthetic devices (catheters, heart valves).
    • A leading cause of nosocomial infections.
  • Cutibacterium acnes (formerly Propionibacterium)
    • Associated with acne vulgaris pathogenesis.
    • Thrives in lipid-rich sebaceous glands.
  • Staphylococcus aureus
    • Can be transient or persistent flora.
    • Causes folliculitis, abscesses, and impetigo.

S. epidermidis, a common skin commensal, is a major cause of nosocomial infections on prosthetic devices and catheters due to its ability to form biofilms.

S. epidermidis biofilm on catheter

High‑Yield Points - ⚡ Biggest Takeaways

  • Staphylococcus epidermidis is the most dominant inhabitant of the skin; it is coagulase-negative.
  • The skin is primarily colonized by Gram-positive bacteria that are tolerant of dry, high-salt conditions.
  • Cutibacterium acnes (formerly Propionibacterium) thrives in sebaceous glands and is implicated in acne vulgaris.
  • Normal flora provides colonization resistance, preventing overgrowth of pathogens like S. aureus.
  • Breaches in the skin barrier (e.g., catheters, wounds) can cause opportunistic infections by resident flora.
  • Moist areas like the axilla and groin harbor a higher density and diversity of microbes.

Practice Questions: Skin microbiome

Test your understanding with these related questions

A 65-year-old man presents to the emergency department with a complaint of intense pain in his right foot for the past month, along with fever and chills. He denies any traumatic injury to his foot in recent memory. He has a medical history of poorly-controlled type II diabetes and is a former smoker with extensive peripheral vascular disease. On physical exam, the area of his right foot around the hallux is swollen, erythematous, tender to light palpation, and reveals exposed bone. Labs are notable for elevated C-reactive protein and erythrocyte sedimentation rate. The physician obtains a biopsy for culture. What is the most likely causative organism for this patient’s condition?

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Flashcards: Skin microbiome

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_____ is a coagulase-negative Staph that has the ability to synthesize extracellular polysaccharide matrix (biofilm).

TAP TO REVEAL ANSWER

_____ is a coagulase-negative Staph that has the ability to synthesize extracellular polysaccharide matrix (biofilm).

Staph epidermidis

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