Microbiome and immune system interactions

Microbiome and immune system interactions

Microbiome and immune system interactions

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Introduction to the Microbiome - The Body's Roommates

  • Microbiome: The collective genetic material of all microorganisms (bacteria, fungi, archaea, viruses) residing in and on the human body.
  • Microbiota: The microorganisms themselves. Key sites include the gut (highest density), skin, oral, and urogenital tracts.
  • Primarily established within the first 1-3 years of life, influenced by delivery mode (vaginal vs. C-section) and diet (breast milk vs. formula).

Human microbiota composition in different body regions

⭐ The gut microbiome plays a vital metabolic role, including the synthesis of essential nutrients like Vitamin K and certain B vitamins (e.g., folate, biotin).

Microbiome & Immune Development - Immune System Schooling

  • The gut microbiome is essential for educating and maturing the host immune system, particularly in early life. This process establishes immune tolerance and homeostasis.
  • Key site: Gut-Associated Lymphoid Tissue (GALT), the body's largest immune organ.
  • Mechanism of Action:
    • Commensal bacteria provide molecular signals that drive immune cell development.
    • Short-Chain Fatty Acids (SCFAs) (e.g., butyrate) promote regulatory T cell (Treg) differentiation, crucial for preventing autoimmunity.
    • Specific microbes guide T-helper cell balance (e.g., Th1/Th2/Th17).
    • Strengthens gut barrier integrity by increasing tight junction proteins.

Gut-brain axis: Eubiosis vs. Dysbiosis and CNS effects

High-Yield: Bacteroides fragilis, a gut commensal, produces Polysaccharide A (PSA). PSA directly induces IL-10-producing Tregs, which systemically suppress inflammation.

  • Clinical Link (Hygiene Hypothesis): Reduced early-life microbial exposure can lead to an "uneducated" immune system, increasing risk for allergic and autoimmune diseases.

Maintaining Homeostasis - The Peacekeeper's Toolkit

  • Barrier Fortification: Commensal bacteria enhance the gut epithelial barrier by strengthening tight junctions, preventing pathogen translocation.
  • Immune System Education (Priming):
    • Early life exposure to microbes is crucial for developing immune tolerance.
    • Segmented Filamentous Bacteria (SFB) are potent inducers of Th17 cells, vital for mucosal immunity.
    • Other microbes promote regulatory T cells (Treg cells), which suppress excessive inflammation.
  • Competitive Exclusion: Normal flora outcompete pathogens for nutrients and attachment sites.
  • Metabolic Modulation:
    • Gut flora ferment dietary fiber into Short-Chain Fatty Acids (SCFAs) like butyrate.
    • Butyrate is an energy source for colonocytes and has anti-inflammatory effects, promoting Treg cell differentiation.

Gut Microbiome-Immune System Interactions Diagram

⭐ Dysbiosis, an imbalance in the normal flora, is linked to inflammatory disorders like IBD, as the balance between pro-inflammatory Th17 cells and anti-inflammatory Treg cells is disrupted.

Dysbiosis & Disease - When Good Bugs Go Bad

  • Dysbiosis: A microbial imbalance on or inside the body, most commonly in the gut, disrupting homeostasis.
  • Key Triggers:
    • Antibiotics: Widespread disruption of commensal populations.
    • Diet: Low-fiber, high-sugar/fat diets starve beneficial microbes.
    • Host Factors: Stress, genetics, immunodeficiency.
  • Pathogenic Consequences:
    • Loss of colonization resistance → opportunistic infections.
    • ↓ Production of beneficial metabolites (e.g., butyrate), weakening the gut barrier.
    • Chronic immune activation and systemic inflammation.

Healthy vs. UC Intestine: Microbiome & Immune Interactions

  • Clinical Associations:
    • Clostridioides difficile infection
    • Inflammatory Bowel Disease (IBD)
    • Metabolic Syndrome
    • Allergies

⭐ Fecal microbiota transplantation (FMT) is a highly effective therapy for recurrent C. difficile colitis, directly restoring a healthy, competitive microbiome.

High‑Yield Points - ⚡ Biggest Takeaways

  • The gut microbiome is crucial for educating the host immune system, establishing immune tolerance.
  • Commensals promote T-regulatory cells (Tregs), which suppress excessive inflammation.
  • Fiber fermentation yields Short-Chain Fatty Acids (SCFAs) like butyrate, with potent anti-inflammatory effects.
  • Dysbiosis (imbalance) is strongly linked to IBD, allergies, and various autoimmune diseases.
  • The microbiome enhances gut barrier integrity, preventing pathogen translocation.
  • Molecular mimicry between microbial and self-antigens can trigger autoimmunity.

Practice Questions: Microbiome and immune system interactions

Test your understanding with these related questions

A 72-year-old woman presents to the clinic complaining of diarrhea for the past week. She mentions intense fatigue and intermittent, cramping abdominal pain. She has not noticed any blood in her stool. She recalls an episode of pneumonia last month for which she was hospitalized and treated with antibiotics. She has traveled recently to Florida to visit her family and friends. Her past medical history is significant for hypertension, peptic ulcer disease, and hypercholesterolemia for which she takes losartan, esomeprazole, and atorvastatin. She also has osteoporosis, for which she takes calcium and vitamin D and occasional constipation for which she takes an over the counter laxative as needed. Physical examination shows lower abdominal tenderness but is otherwise insignificant. Blood pressure is 110/70 mm Hg, pulse is 80/min, and respiratory rate is 18/min. Stool testing is performed and reveals the presence of anaerobic, gram-positive bacilli. Which of the following increased this patient’s risk of developing this clinical presentation?

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Flashcards: Microbiome and immune system interactions

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Which bacteria is associated with endocarditis, biliary tree infection, and UTI? _____

TAP TO REVEAL ANSWER

Which bacteria is associated with endocarditis, biliary tree infection, and UTI? _____

Enterococcus faecalis

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