Bacterial taxonomy and classification

Bacterial taxonomy and classification

Bacterial taxonomy and classification

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Bacterial ID - The Usual Suspects

  • Gram Stain: The crucial first step; differentiates based on cell wall peptidoglycan thickness.
    • Gram-positive: Purple/blue (thick wall).
    • Gram-negative: Pink/red (thin wall).
  • Key Biochemical Tests:
    • Catalase: Differentiates Staphylococcus (+) vs. Streptococcus (-).
    • Coagulase: Differentiates S. aureus (+) vs. coagulase-negative staph.
    • Oxidase: Differentiates Pseudomonas (+) vs. Enterobacteriaceae (-).

Listeria monocytogenes is a Gram-positive, catalase-positive rod with characteristic tumbling motility, a key pathogen in meningitis for neonates and immunocompromised individuals.

The Great Divide - Pinks vs. Purples

  • Gram Stain: A key differential stain dividing bacteria based on their cell wall structure, specifically the peptidoglycan layer thickness.

  • Gram-Positive (Purple)

    • Thick peptidoglycan layer.
    • Retains crystal violet dye after alcohol wash, appearing blue-purple.
    • Cell wall contains teichoic and lipoteichoic acids, which are major surface antigens.
  • Gram-Negative (Pink)

    • Thin peptidoglycan layer located in the periplasmic space.
    • Outer membrane with Lipopolysaccharide (LPS).
    • Loses crystal violet on decolorization; counterstained with safranin, appearing pink-red.

Gram-positive vs. Gram-negative Bacterial Cell Walls

⭐ The Lipopolysaccharide (LPS) in the outer membrane of Gram-negative bacteria contains Lipid A (Endotoxin), a powerful activator of the immune system that can trigger fever and septic shock.

📌 Mnemonic: Positive is Purple.

Rule Breakers - The Atypicals

  • Bacteria that do not stain well with traditional Gram stain.
  • Often lack a typical peptidoglycan cell wall or are obligate intracellular.

📌 Mnemonic: Really Clever Microbes Like Chilling Inside (Rickettsia, Chlamydia, Mycoplasma, Legionella, Coxiella, Influenza - Haemophilus)

OrganismKey FeaturesClinical Pearl
ChlamydiaObligate intracellular; biphasic life cycle (elementary/reticulate bodies)Most common bacterial STI in the US
MycoplasmaNo cell wall; pleomorphic shape; membrane contains sterols"Walking pneumonia"; resistant to penicillins
RickettsiaObligate intracellular; requires arthropod vectorRocky Mountain Spotted Fever (rash starts on wrists/ankles)
LegionellaPoor Gram stain; requires silver stain; facultative intracellularPneumonia from contaminated water sources (AC units, misters)

Mycoplasma pneumoniae fried egg colonies on Eaton agar

DNA Detectives - Modern ID

  • Molecular Methods: Bypass traditional culture for rapid, precise identification.
  • PCR/NAAT: Amplifies specific DNA/RNA sequences for detection.
  • 16S rRNA Gene Sequencing: IDs bacteria via a conserved ribosomal gene.
  • MALDI-TOF MS: Matches protein profile against a database for a spectral "fingerprint".

⭐ 16S rRNA sequencing is crucial for identifying unculturable or slow-growing organisms like Tropheryma whipplei.

High‑Yield Points - ⚡ Biggest Takeaways

  • Gram stain is the first crucial step, separating bacteria into Gram-positive (purple, thick peptidoglycan) and Gram-negative (pink, thin peptidoglycan).
  • Lipopolysaccharide (LPS) in the outer membrane of Gram-negatives is a potent endotoxin that triggers septic shock.
  • Atypical bacteria either lack a cell wall (Mycoplasma) or are obligate intracellular parasites (Rickettsia, Chlamydia).
  • Acid-fast staining is essential for identifying Mycobacteria due to their unique mycolic acid cell walls.
  • Spore-forming bacteria (Bacillus, Clostridium) are notoriously difficult to kill.

Practice Questions: Bacterial taxonomy and classification

Test your understanding with these related questions

A 50-year-old male presents to the emergency room complaining of fever, shortness of breath, and diarrhea. He returned from a spa in the Rocky Mountains five days prior. He reports that over the past two days, he developed a fever, cough, dyspnea, and multiple watery stools. His past medical history is notable for major depressive disorder and peptic ulcer disease. He takes omeprazole and paroxetine. He does not smoke and drinks alcohol on social occasions. His temperature is 102.8°F (39.3°C), blood pressure is 120/70 mmHg, pulse is 65/min, and respirations are 20/min. Physical examination reveals dry mucus membranes, delayed capillary refill, and rales at the bilateral lung bases. A basic metabolic panel is shown below: Serum: Na+: 126 mEq/L Cl-: 100 mEq/L K+: 4.1 mEq/L HCO3-: 23 mEq/L Ca2+: 10.1 mg/dL Mg2+: 2.0 mEq/L Urea nitrogen: 14 mg/dL Glucose: 90 mg/dL Creatinine: 1.1 mg/dL Which of the following is the most appropriate growth medium to culture the pathogen responsible for this patient’s condition?

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Flashcards: Bacterial taxonomy and classification

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What is the diagnostic test of choice for Neisseria gonorrhoeae and Chlamydia trachomatis?_____

TAP TO REVEAL ANSWER

What is the diagnostic test of choice for Neisseria gonorrhoeae and Chlamydia trachomatis?_____

Nucleic acid amplification test (NAAT)

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