Bacterial metabolism

Bacterial metabolism

Bacterial metabolism

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Energy & Carbon Sources - Bacterial Diets

Classification based on how bacteria acquire energy and carbon.

  • Energy Source
    • Phototrophs: Use light.
    • Chemotrophs: Use chemical compounds.
      • Organotrophs: Organic chemicals.
      • Lithotrophs: Inorganic chemicals.
  • Carbon Source
    • Autotrophs: Use inorganic $CO_2$.
    • Heterotrophs: Use organic compounds.

Bacterial Classification by Energy and Carbon Source

⭐ Nearly all medically important bacteria are chemoheterotrophs. They derive both energy and carbon from organic compounds, typically sourced from their host.

Oxygen Requirements - To Breathe or Not

  • Obligate Aerobes: Require O₂ for aerobic respiration; produce ATP via cellular respiration.
    • Possess catalase and superoxide dismutase (SOD) to neutralize reactive oxygen species (ROS).
    • 📌 Nagging Pests Must Breathe: Nocardia, Pseudomonas, Mycobacterium, Bacillus.
  • Facultative Anaerobes: Use O₂ when present, but can switch to fermentation or anaerobic respiration.
    • Possess catalase and SOD.
    • e.g., Staphylococci, Enterobacteriaceae (E. coli).
  • Obligate Anaerobes: O₂ is toxic; they lack catalase and/or SOD.
    • 📌 Anaerobes Can't Breathe Fresh Air: Actinomyces, Clostridium, Bacteroides, Fusobacterium.
  • Microaerophiles: Require O₂ at low concentrations (2-10%).
    • e.g., Campylobacter jejuni, Helicobacter pylori.

⭐ Aminoglycosides are ineffective against anaerobes because their uptake across the bacterial cell membrane is an oxygen-dependent process.

Metabolic Pathways - ATP Factories

  • Core Goal: Generate ATP & precursor molecules.
  • Three Central Pathways:
    • Glycolysis: Cytoplasmic. Glucose → 2 Pyruvate. Net: 2 ATP, 2 NADH.
    • Krebs Cycle (TCA): Links to glycolysis via PDC (Pyruvate → Acetyl-CoA). Generates GTP, NADH, FADH₂.
    • Oxidative Phosphorylation: Main ATP generator. ETC on the inner cell membrane creates a proton motive force ($H^+$ gradient) to power ATP synthase.
  • Final Electron Acceptor Dictates Lifestyle:
    • Aerobes: Use O₂. High ATP yield (~32 ATP/glucose).
    • Anaerobes: Use inorganic molecules (e.g., $NO_3^-$, $SO_4^{2-}$). Lower ATP yield.
    • Fermentation: Regenerates $NAD^+$ for glycolysis; no net ATP gain.

⭐ Obligate anaerobes lack catalase and superoxide dismutase (SOD), making O₂ toxic. They cannot handle reactive oxygen species.

Cellular Metabolic Pathways and Immune Cell Activation

Key Enzymes & Tests - Metabolic Fingerprints

  • Catalase: Degrades $H_2O_2$ into $H_2O$ and $O_2$. Differentiates Staphylococci (Cat+) from Streptococci (Cat-).
    • Test: Bubbles upon adding $H_2O_2$.
  • Coagulase: Converts fibrinogen to fibrin. Identifies S. aureus (Coag+) from other Staph.
    • Test: Clot formation in plasma.
  • Urease: Hydrolyzes urea to ammonia ($NH_3$) and $CO_2$.
    • 📌 Pee CHUNKSS: Proteus, Cryptococcus, H. pylori, Ureaplasma, Nocardia, Klebsiella, S. epidermidis, S. saprophyticus.
  • Oxidase: Detects cytochrome c oxidase. Differentiates Neisseria & Pseudomonas (Oxidase+) from Enterobacteriaceae (Oxidase-).

⭐ Catalase-positive organisms can survive the oxidative burst within phagocytes, a key virulence factor. The test is a critical initial step for identifying Gram-positive cocci.

High‑Yield Points - ⚡ Biggest Takeaways

  • Obligate aerobes like Pseudomonas & Mycobacterium require O₂ for maximal ATP generation.
  • Obligate anaerobes like Clostridium & Bacteroides lack catalase and superoxide dismutase, making O₂ toxic.
  • Most pathogenic bacteria are facultative anaerobes, capable of growing with or without O₂.
  • Lactose fermentation is a key differential on MacConkey agar, turning colonies pink.
  • Key identifying enzymes include catalase, urease, coagulase, and oxidase.

Practice Questions: Bacterial metabolism

Test your understanding with these related questions

A medical technician is trying to isolate a pathogen from the sputum sample of a patient. The sample is heat fixed to a slide then covered with carbol fuchsin stain and heated again. After washing off the stain with clean water, the slide is covered with 1% sulfuric acid for decolorization. The sample is rinsed again and stained with methylene blue. Microscopic examination shows numerous red, branching filamentous organisms. Which of the following is the most likely isolated pathogen?

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Flashcards: Bacterial metabolism

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What is the oxygen dependency of Bacillus anthracis?_____

TAP TO REVEAL ANSWER

What is the oxygen dependency of Bacillus anthracis?_____

obligate aerobe

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