Initial Workup - Spotting the Flames
- Clinical Picture: Suspect in patients with chronic (>6 weeks) diarrhea, abdominal pain, weight loss, and/or signs of malabsorption.
- Lab Panel:
- CBC for anemia (microcytic) & thrombocytosis.
- CMP for ↓albumin, electrolyte issues.
- Inflammatory markers: ↑ESR, ↑CRP.
- Stool Studies:
- Rule out infectious causes (esp. C. difficile).
- Inflammatory markers: Fecal calprotectin or lactoferrin.
⭐ Fecal calprotectin is a highly sensitive non-invasive marker of intestinal inflammation, key for differentiating IBD from IBS and justifying endoscopy.
Endoscopy & Biopsy - The Gold Standard

Colonoscopy with ileoscopy is the definitive procedure. Multiple biopsies from both inflamed and normal-appearing mucosa are crucial for diagnosis and dysplasia surveillance.
- Crohn's Disease (CD) Findings:
- Endoscopy: Skip lesions (discontinuous), aphthous to deep linear ulcers, cobblestoning, strictures.
- Biopsy: Transmural inflammation, lymphoid aggregates.
- Ulcerative Colitis (UC) Findings:
- Endoscopy: Continuous, circumferential inflammation starting from rectum; edema, friability, pseudopolyps.
- Biopsy: Inflammation limited to mucosa/submucosa, crypt abscesses, crypt distortion.
⭐ Non-caseating granulomas on biopsy are pathognomonic for Crohn's Disease, though found in <30% of specimens.
Serology & Stool Tests - Helpful Clues
-
Serology (Antibody Tests): Not for primary diagnosis, but can provide supportive clues.
- p-ANCA (perinuclear anti-neutrophil cytoplasmic Ab): More common in Ulcerative Colitis (~65%).
- ASCA (Anti-Saccharomyces cerevisiae Ab): More common in Crohn's Disease (~65%).
- 📌 Mnemonic: ASCA for Crohn's.
-
Stool Markers (Inflammatory):
- Fecal Calprotectin & Lactoferrin: Neutrophil-derived proteins that are ↑ with intestinal inflammation.
- Key use: Differentiating IBD from non-inflammatory etiologies (e.g., IBS).
- Also valuable for monitoring disease activity.
⭐ Fecal calprotectin has a high negative predictive value; a normal level makes IBD very unlikely, effectively helping to rule it out in patients with chronic diarrhea.
Imaging - A Deeper Look
-
MRE/CTE (Enterography): Preferred for small bowel assessment in Crohn's.
- Key Crohn's Findings:
- Bowel wall thickening (>3 mm) & mural enhancement
- Strictures, fistulas, abscesses
- "Comb sign" (mesenteric hypervascularity)
- "Creeping fat" (fibrofatty proliferation)
- Key Crohn's Findings:
-
Barium Studies (Historical/Classic):
- Crohn's: "String sign" of Kantor (severe terminal ileum narrowing), cobblestoning, fistulas.
- UC: "Lead pipe" colon (loss of haustra), fine ulcerations.
⭐ Pearl: MRE is preferred over CTE to limit cumulative radiation exposure, a key consideration in young IBD patients who require serial imaging.
High-Yield Points - ⚡ Biggest Takeaways
- Initial workup includes stool studies (calprotectin, infection), CBC, and inflammatory markers (CRP/ESR).
- Colonoscopy with biopsy is the gold standard for diagnosis and differentiation.
- UC features continuous, superficial colonic inflammation and is often p-ANCA positive.
- Crohn's disease has transmural, skip lesions from mouth to anus, is ASCA positive, and shows non-caseating granulomas.
- CT or MR enterography evaluates small bowel involvement and complications like fistulas, especially in Crohn's.
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