Probabilistic reasoning

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Probabilistic Reasoning - The Diagnostic Bet

This approach uses probability to refine a diagnosis. It starts with an initial suspicion (Pre-Test Probability) and updates it using test results via Bayes' theorem, which adjusts the odds of disease.

  • Pre-Test Probability (PTP): Baseline chance of disease; often prevalence.
  • Likelihood Ratios (LR): A test's power to shift probability.
    • LR+ for positive result: $sensitivity / (1 - specificity)$
    • LR- for negative result: $(1 - sensitivity) / specificity)$
  • Post-Test Probability: Updated probability. $Post-test,odds = Pre-test,odds \times LR$.

⭐ Likelihood Ratios >10 or <0.1 cause large, often conclusive, changes in post-test probability.

📌 SPIN/SNOUT

  • SP-IN: A highly SPecific test, if Positive, rules IN disease.
  • SN-OUT: A highly SNensitive test, if Negative, rules OUT disease.

Bayesian Toolkit - Odds & Ends

Probabilistic reasoning integrates new data to update diagnostic certainty. Key is moving from pre-test to post-test probability.

  • Pre-test Probability: The likelihood of disease before a test result is known (i.e., prevalence).
  • Post-test Probability: The likelihood of disease after incorporating a test result.

Bayes' Theorem mathematically connects them: $P(A|B) = [P(B|A) * P(A)] / P(B)$.


Diagnostic Test Metrics

Disease PresentDisease Absent
Test PositiveTrue Positive (TP)False Positive (FP)
Test NegativeFalse Negative (FN)True Negative (TN)
  • Specificity = $TN / (TN + FP)$ → Rules IN (SPIN)
  • PPV = $TP / (TP + FP)$
  • NPV = $TN / (TN + FN)$

2x2 Table for Diagnostic Test Accuracy with Formulas

⭐ As disease prevalence increases, PPV increases and NPV decreases. Specificity and sensitivity are intrinsic to the test and do not change with prevalence.

Likelihood Ratios (LR)

  • LR+: $Sensitivity / (1 - Specificity)$. For a positive test, how much to ↑ post-test probability.
  • LR-: $(1 - Sensitivity) / Specificity$. For a negative test, how much to ↓ post-test probability.

Clinical Application - The Fagan Nomogram

A Fagan nomogram is a graphical tool that simplifies determining a patient's post-test probability of disease after a diagnostic test result.

Fagan Nomogram for Post-test Probability Calculation

  • Workflow: A straight line is drawn from the pre-test probability through the likelihood ratio (LR) for the specific test result, arriving at the post-test probability.
  • It's a visual representation of how new information (the test result) modifies an existing belief (pre-test probability).
  • The underlying calculation converts odds:
    • $Post-test,odds = Pre-test,odds \times LR$

⭐ LRs >10 or <0.1 are considered to provide strong evidence to rule in or rule out a diagnosis, respectively.

Cognitive Biases - Mindfield Navigation

  • Anchoring Bias: Over-relying on initial data (the "anchor"), like a prior diagnosis, and failing to adjust for new information.
  • Availability Heuristic: Judging a diagnosis as more likely if it's easily recalled (e.g., a recent, vivid case).
  • Base Rate Neglect: Ignoring the true prevalence of a disease in favor of specific, but misleading, clinical features.
  • Confirmation Bias: Favoring information that confirms a pre-existing belief, while dismissing contradictory evidence.

⭐ The availability heuristic can lead to over-diagnosis of rare but memorable diseases recently seen during training or in media.

High‑Yield Points - ⚡ Biggest Takeaways

  • Bayes' theorem mathematically links pre-test probability and test results to calculate post-test probability.
  • Sensitivity and specificity are intrinsic test properties, independent of prevalence.
  • PPV and NPV, however, are critically dependent on disease prevalence.
  • As prevalence increases, PPV increases while NPV decreases.
  • Likelihood Ratios (LRs) modify pre-test odds to post-test odds, offering a direct measure of test utility.
  • A high LR+ (e.g., >10) strongly rules in disease; a low LR- (e.g., <0.1) strongly rules it out.

Practice Questions: Probabilistic reasoning

Test your understanding with these related questions

A scientist in Chicago is studying a new blood test to detect Ab to EBV with increased sensitivity and specificity. So far, her best attempt at creating such an exam reached 82% sensitivity and 88% specificity. She is hoping to increase these numbers by at least 2 percent for each value. After several years of work, she believes that she has actually managed to reach a sensitivity and specificity much greater than what she had originally hoped for. She travels to China to begin testing her newest blood test. She finds 2,000 patients who are willing to participate in her study. Of the 2,000 patients, 1,200 of them are known to be infected with EBV. The scientist tests these 1,200 patients' blood and finds that only 120 of them tested negative with her new exam. Of the patients who are known to be EBV-free, only 20 of them tested positive. Given these results, which of the following correlates with the exam's specificity?

1 of 5

Flashcards: Probabilistic reasoning

1/10

What is the rule in test for HIV?_____

TAP TO REVEAL ANSWER

What is the rule in test for HIV?_____

HIV-1/2 Ag/Ab

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