Likelihood ratios

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Sensitivity & Specificity - Sickness vs Health

  • Sensitivity: The ability of a test to correctly identify individuals with a disease (True Positive Rate).

    • Formula: $TP / (TP + FN)$
    • Use when the cost of a false negative is high (e.g., missing a serious, treatable disease).
    • 📌 SNOUT: a highly SeNsitive test, when Negative, rules OUT disease.
  • Specificity: The ability of a test to correctly identify individuals without a disease (True Negative Rate).

    • Formula: $TN / (TN + FP)$
    • Use when the cost of a false positive is high (e.g., unnecessary, invasive procedures).
    • 📌 SPIN: a highly SPecific test, when Positive, rules IN disease.

2x2 Table for Diagnostic Test Outcomes

⭐ Screening tests require high sensitivity to catch all potential cases (minimize false negatives), while confirmatory tests need high specificity to avoid misdiagnosing healthy individuals (minimize false positives).

Predictive Values - Patient-Centric Probabilities

  • Positive Predictive Value (PPV): The probability that a patient with a positive test result truly has the disease. It answers the clinical question: “I tested positive, what is the chance I actually have the disease?”

    • Formula: $PPV = \frac{TP}{TP + FP}$
  • Negative Predictive Value (NPV): The probability that a patient with a negative test result truly does not have the disease. It answers: “I tested negative, what is the chance I am disease-free?”

    • Formula: $NPV = \frac{TN}{TN + FN}$

Normal distributions for healthy and sick populations

  • Dependence on Prevalence:
    • If disease prevalence ↑, PPV ↑ and NPV ↓.
    • If disease prevalence ↓, PPV ↓ and NPV ↑.
    • 📌 PPV follows Prevalence.

⭐ Predictive values are not fixed characteristics of a test. They are heavily influenced by the pre-test probability (i.e., prevalence) of the disease in the specific population being tested.

Likelihood Ratios - Odds Of Being Right

  • Quantifies how much a test result changes the likelihood of disease, independent of prevalence.
  • Positive Likelihood Ratio (LR+): How much to ↑ odds of disease given a positive test.
    • $LR+ = \frac{Sensitivity}{(1 - Specificity)}$
  • Negative Likelihood Ratio (LR-): How much to ↓ odds of disease given a negative test.
    • $LR- = \frac{(1 - Sensitivity)}{Specificity}$

Interpreting LRs:

  • LR+ > 10 or LR- < 0.1: Large, often conclusive change.
  • LR+ 5-10 or LR- 0.1-0.2: Moderate change.
  • LR+ 2-5 or LR- 0.2-0.5: Small change.
  • LR = 1: No change in likelihood.

⭐ To calculate post-test probability, convert pre-test probability to odds, multiply by the LR, and then convert post-test odds back to probability. Post-test odds = Pre-test odds × LR.

Fagan Nomogram for Probability Conversion

High‑Yield Points - ⚡ Biggest Takeaways

  • Likelihood Ratios (LRs) quantify the diagnostic power of a test, independent of prevalence.
  • Positive LR (LR+) = sensitivity / (1 − specificity). A high LR+ (ideally >10) strongly rules in a disease.
  • Negative LR (LR−) = (1 − sensitivity) / specificity. A low LR− (ideally <0.1) strongly rules out a disease.
  • LRs are used to calculate post-test probability from pre-test probability.
  • Unlike predictive values, LRs are not affected by disease prevalence.

Practice Questions: Likelihood ratios

Test your understanding with these related questions

A scientist in Chicago is studying a new blood test to detect Ab to EBV with increased sensitivity and specificity. So far, her best attempt at creating such an exam reached 82% sensitivity and 88% specificity. She is hoping to increase these numbers by at least 2 percent for each value. After several years of work, she believes that she has actually managed to reach a sensitivity and specificity much greater than what she had originally hoped for. She travels to China to begin testing her newest blood test. She finds 2,000 patients who are willing to participate in her study. Of the 2,000 patients, 1,200 of them are known to be infected with EBV. The scientist tests these 1,200 patients' blood and finds that only 120 of them tested negative with her new exam. Of the patients who are known to be EBV-free, only 20 of them tested positive. Given these results, which of the following correlates with the exam's specificity?

1 of 5

Flashcards: Likelihood ratios

1/10

A high _____ test is useful for screening in diseases with low prevalence (sensitivity or specificity)

TAP TO REVEAL ANSWER

A high _____ test is useful for screening in diseases with low prevalence (sensitivity or specificity)

sensitivity

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