Prevalence effects on predictive values

Prevalence effects on predictive values

Prevalence effects on predictive values

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Core Concepts - The Diagnostic Toolkit

  • Sensitivity: Rules OUT disease (SNOUT). High sensitivity tests are good for screening.
    • $Sensitivity = TP / (TP + FN)$
  • Specificity: Rules IN disease (SPIN). High specificity tests are good for confirmation.
    • $Specificity = TN / (TN + FP)$
  • Predictive Values: Depend on disease prevalence.
    • PPV: Probability of disease if test is positive. Directly related to prevalence.
      • $PPV = TP / (TP + FP)$
    • NPV: Probability of no disease if test is negative. Inversely related to prevalence.
      • $NPV = TN / (TN + FN)$

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⭐ As prevalence decreases, PPV decreases and NPV increases. Sensitivity and specificity remain unchanged as they are intrinsic properties of the test.

Prevalence Effects - The Value Proposition

Prevalence, the proportion of a population with a disease, directly impacts a test's predictive values. It does not affect sensitivity or specificity.

  • High Prevalence: More true positives (TP) and false negatives (FN).
  • Low Prevalence: More true negatives (TN) and false positives (FP).
Disease PresentDisease Absent
Test PositiveTrue Positive (TP)False Positive (FP)
Test NegativeFalse Negative (FN)True Negative (TN)
-   $PPV = TP / (TP + FP)$
  • Negative Predictive Value (NPV): Probability of not having the disease with a negative test.
    • $NPV = TN / (TN + FN)$

As prevalence changes, so do the predictive values:

  • ↑ Prevalence → ↑ PPV & ↓ NPV.
  • ↓ Prevalence → ↓ PPV & ↑ NPV.

Prevalence effects on PPV and NPV

⭐ Sensitivity and Specificity are intrinsic to the test and are not affected by disease prevalence. A test is just as good at detecting disease in a high-prevalence or low-prevalence population.

Predictive Value Curves - See the Shift

Prevalence effects on PPV and NPV with varying cut-offs

  • Positive Predictive Value (PPV): Directly proportional to prevalence.

    • As disease prevalence ↑, PPV ↑.
    • A positive test in a high-prevalence population is more likely a true positive.
  • Negative Predictive Value (NPV): Inversely proportional to prevalence.

    • As disease prevalence ↑, NPV ↓.
    • A negative test is most reliable when the disease is rare.

⭐ When prevalence is low, a positive result has a high chance of being a false positive, even with a good test. This is why we don't screen for rare diseases in the general population.

  • Prevalence directly influences a test's predictive values but not its sensitivity or specificity.
  • As disease prevalence increases, the Positive Predictive Value (PPV) also increases.
  • Conversely, as disease prevalence decreases, the Negative Predictive Value (NPV) increases.
  • In high-prevalence settings, a positive result is more likely to be a true positive.
  • In low-prevalence settings, a negative result is more likely to be a true negative.

Practice Questions: Prevalence effects on predictive values

Test your understanding with these related questions

A 25-year-old man with a genetic disorder presents for genetic counseling because he is concerned about the risk that any children he has will have the same disease as himself. Specifically, since childhood he has had difficulty breathing requiring bronchodilators, inhaled corticosteroids, and chest physiotherapy. He has also had diarrhea and malabsorption requiring enzyme replacement therapy. If his wife comes from a population where 1 in 10,000 people are affected by this same disorder, which of the following best represents the likelihood a child would be affected as well?

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Flashcards: Prevalence effects on predictive values

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