Transamination and Deamination

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AA Catabolism Intro - Nitrogen's Journey Begins

  • Surplus amino acids (AAs) are degraded; no dedicated storage.
  • Core task: Channel nitrogen from AAs for safe disposal or reuse.
  • Removal of the $\alpha$-amino group is the obligatory first step.
    • Yields: carbon skeleton (for energy/biosynthesis) & a nitrogenous part.
  • Nitrogenous part primarily forms ammonia ($NH_3$) or is transferred to specific carriers.
  • $NH_3$ is highly toxic; requires detoxification (e.g., urea cycle in liver). Amino Acid Catabolism Overview

⭐ The $\alpha$-amino group of most amino acids is ultimately transferred to $\alpha$-ketoglutarate to form glutamate, which acts as a central collector of amino groups.

Transamination - Amino Group Relay

  • Reversible transfer of an amino ($\text{-NH}_2$) group from one L-amino acid to an α-keto acid, yielding a new α-keto acid and a new L-amino acid.
  • Enzymes: Aminotransferases (also called Transaminases).
  • Coenzyme: Pyridoxal Phosphate (PLP), an active Vitamin B6 derivative, is crucial.
  • Site: Primarily liver cytosol & mitochondria; also other tissues.
  • Significance:
    • Key for interconversion of amino acids (e.g., non-essential AA synthesis).
    • Collects amino groups from diverse amino acids onto L-glutamate, the central amino group carrier.
  • 📌 Exceptions (do not transaminate): Lysine, Threonine, Proline, Hydroxyproline. (Mnemonic: "Lying Three Pros Hide")

⭐ Serum ALT (Alanine Aminotransferase) & AST (Aspartate Aminotransferase) are key liver function tests (LFTs); ALT is more liver-specific.

PLP in Transamination coenzyme role in enzymatic transamination)

Oxidative Deamination - Glutamate's Big Release

  • Primary mechanism for $NH_4^+$ liberation from amino acids, mainly in liver & kidney mitochondria.
  • Key Enzyme: Glutamate Dehydrogenase (GDH).
    • Catalyzes: Glutamate + $NAD(P)^+$ + $H_2O$ $\rightleftharpoons$ $\alpha$-Ketoglutarate + $NH_4^+$ + $NAD(P)H$ + $H^+$.
    • Reversible; direction depends on cellular energy state & substrate levels.
  • Regulation (Allosteric):
    • Activators (signal low energy): ADP, GDP.
    • Inhibitors (signal high energy): ATP, GTP.
  • Significance:
    • Provides $NH_4^+$ for urea synthesis.
    • $\alpha$-Ketoglutarate enters TCA cycle for energy or gluconeogenesis.
  • 📌 Mnemonic: GDH: Glutamate Delivers Hydrogen (and Ammonia!).

Oxidative deamination of glutamate

⭐ GDH is unique among dehydrogenases as it can utilize both $NAD^+$ and $NADP^+$ as coenzymes, linking amino acid catabolism to anabolic pathways when $NADP^+$ is used (e.g., fatty acid synthesis).

Non-Oxidative Deamination - Direct Ammonia Drop

  • Direct $NH_3$ removal from select AAs; no oxidation. Mostly PLP-dependent.
    • 📌 AAs: Serine, Threonine, Cysteine, Homocysteine, Histidine.
  • Serine/Threonine Dehydratase (PLP):
    • Serine $\rightarrow$ Pyruvate + $NH_4^+$
    • Threonine $\rightarrow$ $\alpha$-ketobutyrate + $NH_4^+$
  • Desulfhydrases (PLP): For sulfur AAs (Cys, Hcy).
    • Cysteine $\rightarrow$ Pyruvate + $NH_4^+$ + $H_2S$
  • Histidase (No PLP):
    • Histidine $\rightarrow$ Urocanate + $NH_4^+$
    • Deficiency: Histidinemia.

⭐ Histidase (Histidine $\rightarrow$ Urocanate + $NH_4^+$) deficiency causes Histidinemia, a key inborn error of metabolism.

  • Transdeamination: Major pathway for amino acid catabolism. Sequential action of:
    • Aminotransferases (e.g., ALT, AST; cofactor: PLP - Pyridoxal Phosphate)
    • Glutamate Dehydrogenase (GDH) in liver mitochondria.
  • Overall Process: Amino group from AA $\rightarrow$ Glutamate $\rightarrow$ $NH_4^+$ (for urea cycle).
    • Glutamate + $NAD(P)^+$ $\xrightarrow{GDH}$ $\alpha$-Ketoglutarate + $NH_4^+$ + $NAD(P)H$.
  • Clinical Significance:
    • Liver damage: ↑ serum ALT (SGPT) & AST (SGOT).
    • Hepatic encephalopathy: From ↑ blood $NH_3$.

⭐ ALT is more liver-specific than AST. AST also found in heart, muscle. (📌 ALT: L for Liver). Transdeamination pathway diagram

High‑Yield Points - ⚡ Biggest Takeaways

  • Transamination by aminotransferases (e.g., ALT, AST) requires PLP (B6), collecting amino groups on glutamate.
  • ALT is more liver-specific; AST is also in heart and muscle.
  • Oxidative deamination of glutamate by mitochondrial Glutamate Dehydrogenase (GDH) releases NH₄⁺ for the urea cycle.
  • GDH uses NAD⁺/NADP⁺ and is allosterically regulated: inhibited by ATP/GTP, activated by ADP/GDP.
  • Non-oxidative deamination occurs for serine and threonine.

Practice Questions: Transamination and Deamination

Test your understanding with these related questions

Which of the following options is false in a patient with advanced liver disease?

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Flashcards: Transamination and Deamination

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NH3 is excreted in the urine primarily in the form of _____ (from the liver) and NH4+ (from glutamine breakdown)

TAP TO REVEAL ANSWER

NH3 is excreted in the urine primarily in the form of _____ (from the liver) and NH4+ (from glutamine breakdown)

urea

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